PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41972.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 336aa    MW: 37657.9 Da    PI: 8.8018
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41972.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.53.3e-33121176359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  ++rY+eCl+NhAas+G+h+vDGCgEfm+s geegt+++l+CaAC+CHRnFHR+eve 
   KHN41972.1 121 SIRYRECLRNHAASMGSHVVDGCGEFMAS-GEEGTPESLRCAACECHRNFHRKEVEG 176
                  689*************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.6E-30122174IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.7E-30123174IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-20123176IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.346124173IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.6E-17264328IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-27266330IPR009057Homeodomain-like
TIGRFAMsTIGR015654.2E-25270327IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAMRGQQDKE IEIPTTTTLG YNLPNRDSSS SSSKLSSPTV GERSSSDHDQ QHHQPTHQTR  60
TLIFNETPHH NLYPPPPPPP PALAPHRPTS DPDLSTPIAP TSNPSRTAPP QTTTTTTSTP  120
SIRYRECLRN HAASMGSHVV DGCGEFMASG EEGTPESLRC AACECHRNFH RKEVEGELRP  180
QPQPQPQTHV PNYHSYYTNK HNGHLHYPTP SSSSLHHRLV TPTSLVSPVM MAFGGPAESS  240
SEDLNMFQSN TGGAQLISVQ QHAPLLSSSK KRFRTKFSQH QKDRMMEFAD KIDWKIHKHN  300
EQEVQQFCSQ VGVKRQVFKV WMHNNKQTTS SKKQQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-202693311678ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41972.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958110.0BT095811.1 Soybean clone JCVI-FLGm-19N6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304635.20.0zinc-finger homeodomain protein 6-like
RefseqXP_028187278.10.0zinc-finger homeodomain protein 6-like isoform X1
TrEMBLA0A0R0HN430.0A0A0R0HN43_SOYBN; Uncharacterized protein
TrEMBLA0A445HY520.0A0A445HY52_GLYSO; Zinc-finger homeodomain protein 6
STRINGGLYMA11G07360.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.14e-58homeobox protein 24
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]