PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN41937.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 205aa MW: 22315.8 Da PI: 7.2034 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 172.3 | 2.4e-53 | 1 | 140 | 22 | 153 |
DUF702 22 eRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsse 112 +RCRtCCksrgfdC+thvkstWvpa++rrer qql+a+++++++++ + +kr+r + +++s l++t+ +s+ s++ le ++P+ v+s+ KHN41937.1 1 MRCRTCCKSRGFDCQTHVKSTWVPASRRRERLQQLSALQQHQQQQQtlepassaGGDLPKRHRA-RDHHHSPLACTRFPSNPSSSGLEEVNFPAVVRSA 98 7**********************************99999988888899986655555666666.47889999************************** PP DUF702 113 avfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153 a frcvrvss+d+ +eee+aY tav+i+GhvfkGiLyd+G+e KHN41937.1 99 AEFRCVRVSSMDEeAEEEYAYSTAVNIAGHVFKGILYDYGPE 140 ************967889**********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01623 | 8.9E-17 | 1 | 28 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Pfam | PF05142 | 7.7E-52 | 1 | 140 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 5.5E-24 | 91 | 139 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 205 aa Download sequence Send to blast |
MRCRTCCKSR GFDCQTHVKS TWVPASRRRE RLQQLSALQQ HQQQQQTLEP ASSAGGDLPK 60 RHRARDHHHS PLACTRFPSN PSSSGLEEVN FPAVVRSAAE FRCVRVSSMD EEAEEEYAYS 120 TAVNIAGHVF KGILYDYGPE GMNTNYMDAV AAAGESSSTG VGALNLTTGA IVSEPLGVDP 180 SSLYPAPLNS FMPGSGTQFF PHPRS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN41937.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538866.1 | 1e-150 | protein SHI RELATED SEQUENCE 1 | ||||
Refseq | XP_028187521.1 | 1e-150 | protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9LQZ5 | 1e-56 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | A0A445HY59 | 1e-149 | A0A445HY59_GLYSO; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | I1LHX0 | 1e-149 | I1LHX0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G07710.1 | 1e-149 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75520.1 | 6e-47 | SHI-related sequence 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|