PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41937.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 205aa    MW: 22315.8 Da    PI: 7.2034
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41937.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702172.32.4e-53114022153
      DUF702  22 eRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsse 112
                 +RCRtCCksrgfdC+thvkstWvpa++rrer qql+a+++++++++          + +kr+r  + +++s l++t+ +s+ s++ le  ++P+ v+s+
  KHN41937.1   1 MRCRTCCKSRGFDCQTHVKSTWVPASRRRERLQQLSALQQHQQQQQtlepassaGGDLPKRHRA-RDHHHSPLACTRFPSNPSSSGLEEVNFPAVVRSA 98 
                 7**********************************99999988888899986655555666666.47889999************************** PP

      DUF702 113 avfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153
                 a frcvrvss+d+ +eee+aY tav+i+GhvfkGiLyd+G+e
  KHN41937.1  99 AEFRCVRVSSMDEeAEEEYAYSTAVNIAGHVFKGILYDYGPE 140
                 ************967889**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR016238.9E-17128IPR006510Zinc finger, lateral root primordium type 1
PfamPF051427.7E-521140IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016245.5E-2491139IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MRCRTCCKSR GFDCQTHVKS TWVPASRRRE RLQQLSALQQ HQQQQQTLEP ASSAGGDLPK  60
RHRARDHHHS PLACTRFPSN PSSSGLEEVN FPAVVRSAAE FRCVRVSSMD EEAEEEYAYS  120
TAVNIAGHVF KGILYDYGPE GMNTNYMDAV AAAGESSSTG VGALNLTTGA IVSEPLGVDP  180
SSLYPAPLNS FMPGSGTQFF PHPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41937.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538866.11e-150protein SHI RELATED SEQUENCE 1
RefseqXP_028187521.11e-150protein SHI RELATED SEQUENCE 1-like
SwissprotQ9LQZ51e-56SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A445HY591e-149A0A445HY59_GLYSO; Protein SHI RELATED SEQUENCE 1
TrEMBLI1LHX01e-149I1LHX0_SOYBN; Uncharacterized protein
STRINGGLYMA11G07710.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.16e-47SHI-related sequence 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]