PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN41927.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 27226.3 Da PI: 9.3817 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.1 | 6.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien +nrqvt+skRrngi+KKA+ELSvLCda+v++i+fs+++k++ey+s KHN41927.1 9 KLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYIS 59 569**********************************************86 PP | |||||||
2 | K-box | 66.4 | 9.7e-23 | 76 | 171 | 6 | 98 |
K-box 6 gks.leeakaeslqqelakLkkeienLqreqRhllGedL..esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 g l+ +++e++ ++l+kL + +++L+r++Rh++Ge+L +++s+++L+ Le++L +s+ kiR++K +++++ +++ +kk k+l++ n++L +l KHN41927.1 76 GDIdLWRSHYEKMLENLKKLIDINNKLRRQIRHRIGEGLdmDDMSFQQLRTLEEDLVSSIGKIRERKFHVIKTRTDTCRKKVKSLEQMNRDLLFEL 171 43359********************************763369***********************************************997665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.497 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.05E-38 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 8.63E-35 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-25 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.9E-18 | 83 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.598 | 85 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGRGKIEIKL IENPTNRQVT YSKRRNGIFK KAHELSVLCD AKVSLIMFSK NNKMHEYISP 60 GLTTKRIIDQ YQKTLGDIDL WRSHYEKMLE NLKKLIDINN KLRRQIRHRI GEGLDMDDMS 120 FQQLRTLEED LVSSIGKIRE RKFHVIKTRT DTCRKKVKSL EQMNRDLLFE LEKCAIHPQF 180 ILHDEGDEES AVALANGAST LYAFCHQHHS HLNLPSHHSH GEEPFKTDDL RLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6byy_B | 1e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6byy_C | 1e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6byy_D | 1e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6bz1_A | 1e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6bz1_B | 1e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6bz1_C | 1e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6bz1_D | 1e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN41927.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094283 | 0.0 | BT094283.1 Soybean clone JCVI-FLGm-14H3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006590707.1 | 1e-174 | floral homeotic protein DEFICIENS isoform X4 | ||||
Refseq | XP_028189014.1 | 1e-174 | floral homeotic protein DEFICIENS-like isoform X4 | ||||
Swissprot | Q003J2 | 1e-94 | TM6_VITVI; Agamous-like MADS-box protein TM6 | ||||
TrEMBL | A0A0R0HN96 | 1e-172 | A0A0R0HN96_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G07820.1 | 1e-171 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-66 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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