PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41906.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 349aa    MW: 38491.8 Da    PI: 5.524
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41906.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34e-06324343625
                 -SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                 C+f+  +  C+ G+rC+F H
  KHN41906.1 324 CKFYNTSKGCRNGSRCRFQH 343
                 ******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.418318346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4323343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5324346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDRSKNSKTV RWAQESSLRE VHVFSPDKDC SSMVGKKCQE HLQAKSSSIS PSTTDDNNDL  60
PPGFRPIIDV SRIPQIKWKC PPSVVLNSGW RMAAGEESTE KDNQKQRELK KLEAVYPRDS  120
HIPADPFVSS DVENELGYDD SDTPLVPLES EEDVENELGY DDSDSTPLVP LESKEDIAIS  180
TVPPSNLGEA DVATALATVM AIVKHNEEPG NSIIDANFIL RLANDPKMLK ELTDSNNNNP  240
ENASLTMPAP PQITATAQTS PPPSLKRGTK RAIPSGSERK SCSEQAWPSG GSVSSSQPRV  300
VKKDVDYYRN QVTKNDSGKV NKQCKFYNTS KGCRNGSRCR FQHTSVWKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41906.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590721.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_028187335.10.0zinc finger CCCH domain-containing protein 30-like
TrEMBLA0A445HYD40.0A0A445HYD4_GLYSO; Zinc finger CCCH domain-containing protein 30
TrEMBLK7LNJ40.0K7LNJ4_SOYBN; Uncharacterized protein
STRINGGLYMA11G08041.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2425722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.28e-07HB-other family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]