PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN41795.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 264aa MW: 28944.4 Da PI: 4.9768

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN41795.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	103.6	1.8e-32	84	175	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s s++s+r+g+i++r fvC keg+r e++k+ + + +r+raetr+gCka+l+vk +++g+w+v+++ +eHnHel+p KHN41795.1 84 FYNSYARRVGFSTRVSMSRRSRRDGSIIQRSFVCAKEGFRVEREKHlvDGRVKRPRAETRVGCKAMLVVKIQDSGRWVVSSFLKEHNHELVP 175 *******************************************988888999**********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-30	84	175	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MEFEPLSLSD EVIEFDMIGL GDDAAIDTEH PVEDDEDLVN IDNSPATAFT VLAAGLGPHI 60 AGGDTNLEPC QGMEFESEEA AKAFYNSYAR RVGFSTRVSM SRRSRRDGSI IQRSFVCAKE 120 GFRVEREKHL VDGRVKRPRA ETRVGCKAML VVKIQDSGRW VVSSFLKEHN HELVPPDKAL 180 KYADEGINSP KVYDVALSAL LEAASKVALA TKNGGRQTIL NGTCEEDLHQ SNEVTTSCSD 240 SPIGSQQSSY KVDPLAKHFS RVPV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN41795.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028186966.1	1e-111	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	6e-49	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A445HYW5	1e-109	A0A445HYW5_GLYSO; Protein FAR1-RELATED SEQUENCE 5
STRING	GLYMA11G09400.1	1e-110	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-45	FAR1-related sequence 5

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]