PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN41684.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 248aa MW: 28016.7 Da PI: 9.0007 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.5 | 8.8e-19 | 166 | 200 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l KHN41684.1 166 CSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRL 200 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.846 | 160 | 196 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.5E-16 | 160 | 214 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.9E-14 | 163 | 222 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-14 | 164 | 198 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.72E-14 | 165 | 213 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 166 | 191 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.2E-16 | 166 | 200 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MECLEAALKT SFWKDMALKQ TLLLEEFSSA FNVQNVVASS DDFFLDDLLN LSLLENNNEE 60 PDQQHKNHDS TPQNNQENYN YNLSFNDNSF NTELTIPALY YSNFSKYFLP FPATLAEKVK 120 SPEPGNTGFT FKTPVPAKTR SKPTQTANPR VKKRAVIDGA VAARRCSHCG VQKTPQWRTG 180 PLGAKTLCNA CGVRFKSGRL LPEYRPACSP TFSIKLHSNH HRKVLEMRRK KEVLLEPDTS 240 SPWSIPGF |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN41684.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003519878.1 | 1e-109 | GATA transcription factor 5 | ||||
Refseq | XP_028196769.1 | 1e-109 | GATA transcription factor 5-like | ||||
TrEMBL | A0A0B2SBK4 | 0.0 | A0A0B2SBK4_GLYSO; GATA transcription factor 5 | ||||
STRING | GLYMA02G05710.2 | 1e-109 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66320.2 | 5e-44 | GATA transcription factor 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|