PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41646.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 356aa    MW: 39061.7 Da    PI: 5.8196
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41646.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000472112491255
                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  KHN41646.1 211 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 249
                 6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.236199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-10209259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.88E-6209253No hitNo description
Gene3DG3DSA:4.10.280.103.1E-7213255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MNRGVLQSSP VKQMMAGNPN NWWNINTMRP PPPPPQASPP FFSTPSNFLT PYYTPTSSLP  60
LPSWHDNNQE LPESWSQLLM SGMVSEEEKG GMCQVQSKKL ENWEQQMLSQ APSAPIVDVK  120
QESSVNSYAY GHGNEEFQPA KPTWSQIVPA SSPKSCVTSF SSSMLDFSNN NTDARPPPPD  180
PSSECDSAAT GGAFKKARVQ PPTTQSTFKV RKEKLGDRIT ALHQLVSPFG KTDTASVLLE  240
AIGYIRFLQS QIEALSLPYL GSGSGNMRQQ QSVRNNTNPP FLVQGENNCI FPEDPGQLLN  300
ENCLKRKAAS EQDSQEEQKK DLRSRGLCLV PVSCTLQVGS DNGADYWAPA FGGGFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41646.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0944730.0BT094473.1 Soybean clone JCVI-FLGm-24H22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028233837.10.0transcription factor bHLH68-like isoform X1
SwissprotQ8S3D11e-102BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0B2S4K50.0A0A0B2S4K5_GLYSO; Transcription factor bHLH68
STRINGGLYMA05G35610.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.14e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]