PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41258.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 389aa    MW: 43822.8 Da    PI: 4.938
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41258.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0017426123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                +kC+ C +sF +   L  H+r+H
  KHN41258.1  4 HKCKLCFRSFANGRALGGHMRSH 26
                79********************9 PP
2zf-C2H212.80.00035256278123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC  C+k+F++   L  H  +H
  KHN41258.1 256 YKCDTCNKVFRSYQALGGHRASH 278
                 9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.5E-6327IPR007087Zinc finger, C2H2
SMARTSM003550.088426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.27E-8255278No hitNo description
PfamPF139123.0E-13255280IPR007087Zinc finger, C2H2
SMARTSM003550.014256278IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367256283IPR007087Zinc finger, C2H2
PROSITE patternPS000280258278IPR007087Zinc finger, C2H2
SuperFamilySSF576671.27E-8305332No hitNo description
PfamPF139121.7E-10309332IPR007087Zinc finger, C2H2
SMARTSM003550.22310332IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307310337IPR007087Zinc finger, C2H2
PROSITE patternPS000280312332IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDRHKCKLCF RSFANGRALG GHMRSHMMNL PISKPEELAS SRTIQLSFEA ESASSSSSSS  60
SDEEDEDDEK TLCYDLRENP KRSIRLVDPE FSFATAADTG SVILHDRESE SESSKNNPTR  120
RISKRPWNNN DNYYNNDTTN SSVRKKGLGF EHESTKKCKT ESWVDHDPAS SVSDATTEED  180
VAFCLMMLSR DKWKRQRDQD QPCRFAEREN QYEVEDQEEE DDEEDEEDED DEEAFEESEE  240
SQETSKQCKN RVRGRYKCDT CNKVFRSYQA LGGHRASHKK IKVNGGGREQ ELEHNKKKSG  300
TCVVVEKKTH ECPVCFRVFA SGQALGGHKR THVTGSAATA AAIATTLPSS SAKFGNSFID  360
LNLPAPIDED DASQIENSAV SDAEFVKIH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191196KWKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41258.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150379e-41AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517971.10.0zinc finger protein ZAT9
RefseqXP_028233322.10.0zinc finger protein ZAT9-like
TrEMBLA0A0B2S9810.0A0A0B2S981_GLYSO; Zinc finger protein ZAT9
TrEMBLA0A0R0LEU20.0A0A0R0LEU2_SOYBN; Uncharacterized protein
STRINGGLYMA01G18606.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-59C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]