PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN41135.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 415aa MW: 47070.2 Da PI: 6.2003 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.1e-19 | 207 | 257 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge KHN41135.1 207 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 257 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.80E-33 | 206 | 266 | No hit | No description |
PROSITE profile | PS51032 | 23.024 | 207 | 264 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-40 | 207 | 270 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-32 | 207 | 265 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 207 | 265 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.9E-11 | 208 | 219 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-12 | 208 | 257 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-11 | 230 | 246 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MANNREKSTK EGVEETHHHK VIGESEGQDW EIEKGKGLDL SSGRRQWKPV FDDASLSHRP 60 LKKIRSPERE NPNQQQQQPA SSMLSLQPPS SRIVFPFAFE GSQHPMPFPH PFGTTNLPLF 120 RPNLHPTQQM ISFGSQQNMG YPPFLAPEST MPHQHQQHLQ QHHQQLLHYW SDAINLSPRG 180 RMMMMMNRTE GRQILRPQAQ PLNATKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA 240 EDAAMAYDRE AFKLRGENAK LNFPELFLNK DKAEQSTTVA PASSSNEGST STSSQNTKQP 300 EPIPEEINTE SEDIPPTETI AEENAETGKG ISQPQELVWG EWFNAIPAGW GPGSPVWDDL 360 DPNNNLLLHS QLPFVNPNQQ EFHDDAGASS QIQQEDNSTE PGSSSSPSFP MRPFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-20 | 206 | 264 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN41135.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028238162.1 | 0.0 | ethylene-responsive transcription factor ERF054-like | ||||
TrEMBL | A0A445KFQ8 | 0.0 | A0A445KFQ8_GLYSO; Ethylene-responsive transcription factor ERF054 | ||||
STRING | GLYMA06G45010.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4268 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-56 | ERF family protein |
Publications ? help Back to Top | |||
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