PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN41019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 846aa MW: 94115.8 Da PI: 6.569 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.7 | 2.3e-23 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l KHN41019.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 222 99*****************************8544444..48************************************************..8899999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ KHN41019.1 223 LLGIRRA 229 ****997 PP | |||||||
2 | Auxin_resp | 120.8 | 1e-39 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k KHN41019.1 254 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-49 | 112 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-41 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.61E-21 | 127 | 228 | No hit | No description |
PROSITE profile | PS50863 | 12.379 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-24 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-21 | 128 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.1E-35 | 254 | 337 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 8.2E-8 | 716 | 804 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 8.5E-7 | 718 | 794 | No hit | No description |
PROSITE profile | PS51745 | 24.155 | 720 | 804 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 846 aa Download sequence Send to blast |
MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVAYFPQGH SEQVAATTNR 60 EVDGHIPNYP SLPPQLICQL HNVTMHVDVE TDEVYAQMTL QPLTPQEQKD TFLPMELGVP 120 SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV 240 LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR 300 MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVKD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSLFP LRLKRPWHPG TSSFHDGRDE ATNGLMWLRG GPGDQALNSL NFQGSGLLPW 420 MQQRMDPTLL ANDHNQHYQA MFASGLQNLG SGDLMRQQIM NFQQPFNYLQ QSGNPNPPLQ 480 LQQPQAIQQS VSSNNILQPQ AQVMAENLSQ HLLQKSHNNR EDQTQQQQQQ RHTYQDTVLL 540 QSDQLHQRQH SGLPSPSYSK PDFLDSSMKF PASVSPGQNI LGSLCPEGSG NLLNLSRSGQ 600 SMLTEQLPQQ SWAPKFTPLQ VNAFGNSMQH VQYSGKDTAM VPPHCNSDTQ NPILFGVNID 660 SSGLLLPTTV PRYTTASADS DASAMPLGES GFQSPLYPCG QDSSELVQSA GQVDPQNQTR 720 TFVKVYKSGS VGRSLDISRF SSYHELREEL AQMFGIEGKL EDPLRSGWQL VFVDRENDVL 780 LLGDDPWESF VNNVWYIKIL SPEDIHKMGE QALESLGPSP GQRLNSTGAD SHEIVSGLPS 840 IGSLEY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-157 | 15 | 357 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN41019.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006575466.1 | 0.0 | auxin response factor 8 isoform X2 | ||||
Refseq | XP_028215532.1 | 0.0 | auxin response factor 8-like isoform X3 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A445LT31 | 0.0 | A0A445LT31_GLYSO; Auxin response factor | ||||
TrEMBL | I1JHQ8 | 0.0 | I1JHQ8_SOYBN; Auxin response factor | ||||
STRING | GLYMA02G40650.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4958 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |