PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN41001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 407aa MW: 46016.1 Da PI: 9.8642 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.2 | 7e-19 | 140 | 228 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+k +++s+v + +l lp kf+eeh +k+ +++lede+g ++e + +++ + l++GW+ F+ +++L++gD +vF+l++ s+f ++ ++ KHN41001.1 140 FIKSMVRSHVYSCFWLGLPSKFCEEHL-PKTL-HDMVLEDENGSEYEAVY--IGNRAG--LSGGWRAFALDHKLDDGDALVFELIEASRF--KIYIV 228 89************************4.4555.49***************..555544..*************************99999..55555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-21 | 133 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.33E-22 | 135 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.79E-27 | 138 | 229 | No hit | No description |
Pfam | PF02362 | 3.2E-17 | 140 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.2E-23 | 140 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.788 | 140 | 231 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MAKGCSNNTY EEARKQRLEE NKKRFEDLGI SRISKNLTEI ASSAKKKLRH VPKQKTKKTN 60 VEVEPRRSSR VRNPVRSYRE DVNIDLPPLR KRSRSSSSSW GSYIARPLDE IKEATKEERL 120 CALEAAEAIQ INLNSSNPSF IKSMVRSHVY SCFWLGLPSK FCEEHLPKTL HDMVLEDENG 180 SEYEAVYIGN RAGLSGGWRA FALDHKLDDG DALVFELIEA SRFKIYIVRA FPDSVEEKGN 240 NILEEEGNVR ATKAPKAACN LESECKTKKP KQAAVYETKE SESSQEYLLD SSIDNEVKPQ 300 GVNPTNKETK FSQKNTPKKS KYPATADSKG KVQIKTEKPK ASIKLSNNTR KSKEGINEIG 360 GSAKLEKNEF VQDADSKLEK VELVEEARKC VTKKLEKTSS KFFRKKA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN41001.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 3e-71 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028215225.1 | 0.0 | putative B3 domain-containing protein At5g58280 isoform X1 | ||||
Swissprot | Q9FHB2 | 1e-67 | Y5828_ARATH; Putative B3 domain-containing protein At5g58280 | ||||
TrEMBL | A0A445LSZ2 | 0.0 | A0A445LSZ2_GLYSO; Putative B3 domain-containing protein isoform B | ||||
STRING | GLYMA02G40400.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12433 | 23 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 2e-53 | B3 family protein |
Publications ? help Back to Top | |||
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