PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN40991.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 718aa MW: 80089.8 Da PI: 6.9284 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.6 | 2.3e-18 | 317 | 416 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+kvl+ sd+++ grlvlpk++ae++ +++ e+ l+++d +g+ W++++++ +++s++yvl+ G +a +L++gD+v+F++++ ++++v++ KHN40991.1 317 FEKVLSASDAGRIGRLVLPKSCAEAYfpPISQSEGLPLQFKDVKGNDWTFQFRFwpNNNSRMYVLE-GVTPCMQAMQLNAGDTVMFSRID-PGGKFVMG 413 99**************************555556677***************9989999999***9.********************887.66666777 PP EE- CS B3 96 vfr 98 +r KHN40991.1 414 SRR 416 766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.6E-29 | 314 | 424 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-19 | 314 | 412 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.36E-22 | 315 | 416 | No hit | No description |
Pfam | PF02362 | 7.9E-16 | 317 | 416 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.348 | 317 | 418 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-19 | 317 | 417 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
MEVEVCMNVS CKNGYAREWK KGWPLRSGGF ARLCHKCGSA YENLIFCQKF HLHQTGWREC 60 SFCNKTLHCG CIASSSMFEY LDYGGIGCVT CVKTSQLNLI RDTENTIGSV RSIKNNASDR 120 HTEHMDSRLL VDGAGKGNLM QLRRHVEASE SSRWQRAERD GIDSCIGPNR QDDRRFSNVM 180 KLSGHSLTFT TLDNNRPTWE TQTMHKSSSQ NMSLGTSSGN SVLPSALDIA ERRLEGKTSF 240 CPFHQGQRLF SISKPLMDGI AINLEASKGV ISQERVARPP ANGKTKNLLL SRYWPRITDQ 300 ELEKLSGDLK STIVPLFEKV LSASDAGRIG RLVLPKSCAE AYFPPISQSE GLPLQFKDVK 360 GNDWTFQFRF WPNNNSRMYV LEGVTPCMQA MQLNAGDTVM FSRIDPGGKF VMGSRRASDS 420 IDTQEASTFS HSNDFATKEA TFSGATANLH SGNSYPDLLR TTKGNGEPYL NRYSEHLRFS 480 TETANCLQTE NDMELRVTWE EAQDLLHPPP CVKPSVETIE DKEFEEFEEP PVFGKGTTIN 540 DHPSGSLSSA SEEMSSRELE NILVTSKDTK KRRIMEKPES IQEHESVGLD DHIDPTDSSA 600 GATTKHPRHR SGCTCIVCIQ PPSGKGRHRP TCTCLACMTV RRRFKTLMMR KKQRESDATQ 660 KDQIHHSDEG DTNGGASRDG AIASNLENEG SLNRMDELGA GQIDLNSHPD HEDMQVAM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 5e-67 | 295 | 424 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 640 | 651 | RRRFKTLMMRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN40991.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518346.1 | 0.0 | B3 domain-containing transcription repressor VAL1 | ||||
Refseq | XP_028190736.1 | 0.0 | B3 domain-containing transcription repressor VAL1-like | ||||
TrEMBL | A0A0R0L085 | 0.0 | A0A0R0L085_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445LTG4 | 0.0 | A0A445LTG4_GLYSO; B3 domain-containing transcription repressor VAL1 | ||||
STRING | GLYMA14G38492.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15634 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 1e-169 | high-level expression of sugar-inducible gene 2 |
Publications ? help Back to Top | |||
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