PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40913.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 684aa    MW: 78152.8 Da    PI: 7.8367
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40913.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.23.2e-2428113289
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                 +Y++YAk+vGFs  +++s++s+ +g++++++f C+++g++ + kk   k +r r++ +t+Cka+++vk++ +g+w ++++ ++HnH+ 
  KHN40913.1  28 YYQTYAKSVGFSAIIKASRRSRISGNFIDAKFACTRYGTPPNPKKP--KPKRARTSPKTDCKASMHVKRTPHGTWIISSFIKHHNHQT 113
                 9****************************************99999..99999*********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-2228113IPR004330FAR1 DNA binding domain
PfamPF105511.1E-28190283IPR018289MULE transposase domain
PROSITE profilePS509669.273471507IPR007527Zinc finger, SWIM-type
PfamPF044344.6E-4479503IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MEPEPEPELE PEPEPGPEFS SKEEAFSYYQ TYAKSVGFSA IIKASRRSRI SGNFIDAKFA  60
CTRYGTPPNP KKPKPKRART SPKTDCKASM HVKRTPHGTW IISSFIKHHN HQTNSNNNAS  120
PSRKPKIKKT LHHLVFAEGD LQFLLDTFMS MQNENPNFFY AVDFNEEQRL RTVFWVDAKA  180
RLDYRHFSDV VLLDTTHVKN ECKLPFVPFV GVNHHFQVFL LGLAFVSDES ESTFSWLMRS  240
WLRAMGGCAP KLMLTDCDEA LKKAVAEVAP ESWHCFCLWH VLSKVPEKLG RVMQRHGGEF  300
VTRFNECVLR SRTKEQFEKR WGKMVGRFEL GDESWLWDIY EDRERWVPAF MKGRVLAGLS  360
TVQRSEAMNC LFDKYVQRKT TLKEFVEQYR VVLQDKCEEE AKADFVTLHR QPALKSPSPF  420
GKQMVELYTN EVFKKFQSEV LGAVACHPRK ESEDGPTKVF RVQDFEDNED FVVTWNESTL  480
EVLCACYSFE FNGFLCRHVM IVLQISAVHS IPPRYILKRW TKDAKCRQTA GDLSMSDAVV  540
SDSRAKRYNN LCQQAFQLGD VGSLSQESYI AAINALEAAL RKCKSLNDSI QSVREPNLPC  600
SGSQEGILIS NSVGHSNKRD STLGKRKVCP EPETVAIGVN SNWQQVENSN TQAAGLDCSY  660
ESQQSIQEMG QLNSSSEPGW LFFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40913.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028179656.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445IUS00.0A0A445IUS0_GLYSO; Protein FAR-RED ELONGATED HYPOCOTYL 3
STRINGGLYMA09G00346.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.20.0far-red elongated hypocotyls 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]