PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN40815.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 548aa MW: 61246.9 Da PI: 6.2277 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 422.8 | 2.8e-129 | 175 | 546 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l+e+L++cA+av+++d e a ++++ l +++s gdp+qRl ay++e+L+arl +s+s +ykal++++ + s + +++++++++++P+ kf++ a KHN40815.1 175 LKEVLIRCAQAVADDDIETAVGFMNNvLAKMVSVGGDPIQRLGAYMLEGLRARLESSGSIIYKALKCEQPT---SNDLMTYMHILYQICPYWKFAYTSA 270 5789********************872566799999**********************************9...89999999***************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 N I ea+ +e+r+HiiDf++ qG+QW+ L+qaLasRp+g+p +R+Tgv++++s+ + l+ +g+rL+++A+++gvpfef+ +a ++lele+L KHN40815.1 271 NAVIGEAMLNESRIHIIDFQVAQGTQWLLLIQALASRPGGAPFIRVTGVDDSQSFhaRGGGLHIVGKRLSDYAKSCGVPFEFHS-AAMCGSELELENLV 368 ***************************************************9999889999***********************.899*********** PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 ++pgEal+Vn+ + lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F++rf+e+l+yy+a+f+s+++ lpr++++ri+ E+++++r+i KHN40815.1 369 IQPGEALVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFAETLSYYTAMFESIDVALPRDDKQRINAEQHCVARDI 467 *************************************************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vn+vaceg+er erhe l+kWr+r+++aGF p pls+++++ ++ +l++++++ yr+++++g+l+lgWk+r++ + SaWr KHN40815.1 468 VNMVACEGDERLERHELLGKWRSRFSMAGFAPCPLSSSVTAAVRNMLNEFNEN-YRLQHRDGALYLGWKSRAMCTSSAWR 546 ***************************************************55.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.412 | 149 | 527 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.6E-127 | 175 | 546 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MQTSKKHPTS AGIHLYLQPA QDIDPYTHYQ ILQSNSCHDN SSSQGTTISF ETSKEQYFTL 60 ESSPAINDLI GCDSPSYASV SSNRSPFSPQ ASHSDQHQSS DNTYGSPTSA HSRYDDDGYE 120 LKNKLRELEI SLLGPDSDIV DSWHCSYKGG RHRASSPTAK HNWDQIVEMI PKLDLKEVLI 180 RCAQAVADDD IETAVGFMNN VLAKMVSVGG DPIQRLGAYM LEGLRARLES SGSIIYKALK 240 CEQPTSNDLM TYMHILYQIC PYWKFAYTSA NAVIGEAMLN ESRIHIIDFQ VAQGTQWLLL 300 IQALASRPGG APFIRVTGVD DSQSFHARGG GLHIVGKRLS DYAKSCGVPF EFHSAAMCGS 360 ELELENLVIQ PGEALVVNFP FVLHHMPDES VSTENHRDRL LRLVKSLSPK VVTLVEQESN 420 TNTSPFFQRF AETLSYYTAM FESIDVALPR DDKQRINAEQ HCVARDIVNM VACEGDERLE 480 RHELLGKWRS RFSMAGFAPC PLSSSVTAAV RNMLNEFNEN YRLQHRDGAL YLGWKSRAMC 540 TSSAWRCY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-62 | 179 | 546 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN40815.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003534887.1 | 0.0 | scarecrow-like protein 13 | ||||
Refseq | XP_014617311.1 | 0.0 | scarecrow-like protein 13 | ||||
Refseq | XP_014617312.1 | 0.0 | scarecrow-like protein 13 | ||||
Refseq | XP_028180835.1 | 0.0 | scarecrow-like protein 13 | ||||
Swissprot | Q9M0M5 | 0.0 | SCL13_ARATH; Scarecrow-like protein 13 | ||||
TrEMBL | A0A445IV94 | 0.0 | A0A445IV94_GLYSO; Scarecrow-like protein 13 isoform A | ||||
TrEMBL | I1L013 | 0.0 | I1L013_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G01440.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4377 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17230.1 | 0.0 | SCARECROW-like 13 |
Publications ? help Back to Top | |||
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