PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN40737.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 621aa MW: 71969.5 Da PI: 8.3916

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN40737.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.6	1.3e-20	11	94	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y YAkevGF+vr+++s +++++e + + ++Cs +g+++ + + + r+etrtgC a++++++ ++++w+v ++ leHnH l KHN40737.1 11 NYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRMKVVN-----HLRKETRTGCPAMIRMRLVESQRWRVLEVTLEHNHML 94 5899*************************************9988.....999******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.0E-18	11	94	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-31	213	306	IPR018289	MULE transposase domain
Pfam	PF04434	1.4E-4	489	532	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.644	500	536	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	511	538	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence Send to blast
MEFESYDDAY NYYICYAKEV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF KRMKVVNHLR 60 KETRTGCPAM IRMRLVESQR WRVLEVTLEH NHMLGAKILR SVKKMGNGTK RKPLPCSEAE 120 GQTVKLYRAL VIDAGGNGNS NCGAIEDRTF SESSNKLNLR KGDTQAIYNF LCRMQLTIPN 180 FFYLMDFNDD GHLRNAFWVD ARSRASCGYF GDVIYFDNTY LSNKFEIPLV TFVGINHHGQ 240 SVLLGCGLLA SETTESYLWL LRTWLKCMSG CSPQTIITDR CKALQSAIVE VFPKSHHCFG 300 LSLIMKKVPE KLGGLHNYDA IRKALIKAVY ETLKVIEFEA AWGFMIQRFG VSDHEWLRSL 360 YEDRVRWAPV YLKDIFFAGM SAARPGESIN PFFDRYVHKQ TPLKEFLDKY ELALHKKHKE 420 ESFSDIESRS SSPLLKTRCS FELQLSRMYT REMFMKFQLE VEEVYSCFGT TQLHVDGPII 480 IFLVKERVLI EGNRREIRDF EVLYSRTAGE VRCICSCFNF YGYLCRHALC VLNFNGVEEI 540 PHKYILSRWK KDYKHPNHSS GGANDTDCTN DTDRIQWSNQ LFRSALQVVE EGILSLDHYN 600 VALQSLEESL SKVHDVEQRQ E

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence Send to blast

MEFESYDDAY NYYICYAKEV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF KRMKVVNHLR  60
KETRTGCPAM IRMRLVESQR WRVLEVTLEH NHMLGAKILR SVKKMGNGTK RKPLPCSEAE  120
GQTVKLYRAL VIDAGGNGNS NCGAIEDRTF SESSNKLNLR KGDTQAIYNF LCRMQLTIPN  180
FFYLMDFNDD GHLRNAFWVD ARSRASCGYF GDVIYFDNTY LSNKFEIPLV TFVGINHHGQ  240
SVLLGCGLLA SETTESYLWL LRTWLKCMSG CSPQTIITDR CKALQSAIVE VFPKSHHCFG  300
LSLIMKKVPE KLGGLHNYDA IRKALIKAVY ETLKVIEFEA AWGFMIQRFG VSDHEWLRSL  360
YEDRVRWAPV YLKDIFFAGM SAARPGESIN PFFDRYVHKQ TPLKEFLDKY ELALHKKHKE  420
ESFSDIESRS SSPLLKTRCS FELQLSRMYT REMFMKFQLE VEEVYSCFGT TQLHVDGPII  480
IFLVKERVLI EGNRREIRDF EVLYSRTAGE VRCICSCFNF YGYLCRHALC VLNFNGVEEI  540
PHKYILSRWK KDYKHPNHSS GGANDTDCTN DTDRIQWSNQ LFRSALQVVE EGILSLDHYN  600
VALQSLEESL SKVHDVEQRQ E

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN40737.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028181943.1	0.0	protein FAR1-RELATED SEQUENCE 6
Refseq	XP_028181944.1	0.0	protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A445IVM8	0.0	A0A445IVM8_GLYSO; Protein FAR1-RELATED SEQUENCE 6
STRING	GLYMA09G02250.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]