PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40658.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 152aa    MW: 16722.1 Da    PI: 4.5276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40658.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.000659451954
                HHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
         HLH 19 afeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                ++e L + l ++   ++s  l+Ka+i   A +YI +L
  KHN40658.1  9 KIESLEDTLQQLRdVTNSSALNKASIIVDASKYIEKL 45
                57777777777443667777**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.56E-5958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-51356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.71983152IPR002912ACT domain
CDDcd048732.30E-492148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MASTSREKKI ESLEDTLQQL RDVTNSSALN KASIIVDASK YIEKLKQKVE GLNSELGIAD  60
SSTSQIDELP MVVVKTLKKG FLINVLLEKN FPGMLVSILE TFEELGLDVL DARVSCEDSF  120
QLEAVGRESH KNDSVDAQVV KQAVLQAIKN VD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40658.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0923090.0BT092309.1 Soybean clone JCVI-FLGm-10J13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028212029.11e-104uncharacterized protein LOC114394597
TrEMBLA0A445FVR21e-103A0A445FVR2_GLYSO; Uncharacterized protein
STRINGGLYMA18G44280.21e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF7241015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.16e-11bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]