PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN40557.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 23690.5 Da PI: 7.5017 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.3e-19 | 66 | 116 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ng r++lg++ +eeAa a+++a+ +++g KHN40557.1 66 RYRGVRRRP-WGKFAAEIRDPKKNG--SRVWLGTYVNEEEAALAYDKAAFNMRG 116 7********.***********9998..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-31 | 66 | 125 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.9E-36 | 66 | 130 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-13 | 66 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-22 | 66 | 125 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.499 | 66 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-13 | 67 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.44E-23 | 74 | 126 | No hit | No description |
PRINTS | PR00367 | 3.9E-13 | 106 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MSSTTTDSDC SYLEQIQQYL LHNDSTILTP PQAFPSPSHD SSSDASVHFE HPSEAHDVNA 60 PPKWRRYRGV RRRPWGKFAA EIRDPKKNGS RVWLGTYVNE EEAALAYDKA AFNMRGQKAK 120 LNFPHLIGSA VQPEPPCLAV SKRSLPESSP PTSPYDSCES KGSKRRKSLV DLLNNLAKNK 180 SQAKVVEMAL EANEVEQWVN ELNDCTLFWC S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-28 | 63 | 130 | 2 | 69 | ATERF1 |
3gcc_A | 5e-28 | 63 | 130 | 2 | 69 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN40557.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143172 | 9e-61 | BT143172.1 Medicago truncatula clone JCVI-FLMt-5M13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006602878.1 | 1e-158 | ethylene-responsive transcription factor 1 | ||||
Refseq | XP_028213403.1 | 1e-158 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q40476 | 6e-37 | ERF1_TOBAC; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A445FW89 | 1e-156 | A0A445FW89_GLYSO; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | K7MUN3 | 1e-156 | K7MUN3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G48741.1 | 1e-157 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-29 | ethylene-responsive element binding factor 13 |
Publications ? help Back to Top | |||
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