PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40506.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 332aa    MW: 37488.5 Da    PI: 6.6067
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40506.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.1e-10164211355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h ++Er+RR+++  ++  L   +P +     k+++Ka +L++Av+Y k+Lq
  KHN40506.1 164 QHHIIAERKRRQELTGSIIALAAAIPGL-----KRMDKAYVLREAVNYTKQLQ 211
                 6799************************.....89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.414161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.23E-8164215No hitNo description
PfamPF000101.8E-7164211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-14164227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-13165222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-10167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEDSLENWIS QLEMEEYHDG SFDEEEFLRE ILKEEQQPEN LWPQRDQKLS NTSPTNSTVS  60
FDEAISFCGS GTLHKSNSSN SIKSLKRSSS SVSPATTTYL LSFDTSSAKP ITLKPSPKLD  120
LALGSSNKRS TSTVTVVKDG CEFEPLMMPQ SQARKKVRRS CETQHHIIAE RKRRQELTGS  180
IIALAAAIPG LKRMDKAYVL REAVNYTKQL QERVKELENQ NKVDSATFIR KSQASSHCET  240
NKEISLFEVE ARVLDEEVLI GIHCEKQKDI VFKIHALLGK LHLSTTSSTV LPFGTSTLII  300
NIIAQMNGEN SMTMHDLVKK LRDYLLEVYD MQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153173RKKVRRSCETQHHIIAERKRR
2169174ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40506.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150377e-32AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028213045.10.0transcription factor NAI1-like isoform X1
TrEMBLA0A445FWH50.0A0A445FWH5_GLYSO; Transcription factor bHLH25 isoform B
STRINGGLYMA18G48126.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149471112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-39bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]