PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40494.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 703aa    MW: 77208 Da    PI: 6.8499
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40494.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.3e-11264320155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  KHN40494.1 264 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 320
                 57*******************4444.2455535555.779999**************98 PP

2AP246.31.1e-14363414155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  KHN40494.1 363 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 414
                 57****************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.89E-19264330No hitNo description
PfamPF008471.2E-8264320IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-14264330IPR016177DNA-binding domain
SMARTSM003802.6E-22265334IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-12265329IPR001471AP2/ERF domain
PROSITE profilePS5103217.319265328IPR001471AP2/ERF domain
PRINTSPR003672.9E-6266277IPR001471AP2/ERF domain
CDDcd000184.42E-25363424No hitNo description
SuperFamilySSF541719.15E-18363424IPR016177DNA-binding domain
PfamPF008473.6E-10363414IPR001471AP2/ERF domain
SMARTSM003807.0E-34364428IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-18364423IPR001471AP2/ERF domain
PROSITE profilePS5103219.058364422IPR001471AP2/ERF domain
PRINTSPR003672.9E-6404424IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MGSMNLLGFS LSPQEHPSSQ DHSQTAPSRF CFNPDGISST DVAGDCFDLT SDSTPHLLNL  60
PSYGIYEAFH RSNNIHTTQD WKENYNSQNL LLGTSCNKQN MNQNQQQQPK LENFLGGHSF  120
GEHEQTYGGN SASTDYMFPA QPVSAGGGGS GGGSNNNNNS NSIGLSMIKT WLRNQPPHSE  180
NNNNNNNESG GNSRSSVQQT LSLSMSTGSQ SSTSLPLLTA SVDNGESSSD NKQPHTTAAL  240
DTTQTGAIET APRKSIDTFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQTRKGRQGG  300
YDKEEKAARA YDLAALKYWG TTTTTNFPIS HYEKELEEMK HMTRQEYVAS LRRKSSGFSR  360
GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDVAAI KFRGLSAVTN  420
FDMSRYDVKS ILESTTLPIG GAAKRLKDME QVELRVENVH RADQEDHSSI MNSHLTQGII  480
NNYAAGGTTT THHHNWHNAL AFHQPQPCTT IHYPYGQRIN WCKQEQDNSD ASHSLSYSDI  540
HQLQLGNNGT HNFFHTNSGL HPMLSMDSAS IDNSSSSNFV VYDGYGGGGG YNVIPMGTTT  600
TVVASDGDQN PRSNHGFGDN EIKALGYESV YGSTTDPYHA HARNLYYLTQ QQPSSVDAVK  660
ASAYDQGSAC NTWVPTAIPT HAPRSSTSMA LCHGATPFSL LHE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40494.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM7758560.0HM775856.1 Glycine max babyboom 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552462.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-146BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A445FWJ90.0A0A445FWJ9_GLYSO; AP2-like ethylene-responsive transcription factor BBM2
STRINGGLYMA18G47980.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-131AP2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]