PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN40494.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 703aa MW: 77208 Da PI: 6.8499 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.1 | 3.3e-11 | 264 | 320 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g KHN40494.1 264 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 320 57*******************4444.2455535555.779999**************98 PP | |||||||
2 | AP2 | 46.3 | 1.1e-14 | 363 | 414 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g KHN40494.1 363 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 414 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.89E-19 | 264 | 330 | No hit | No description |
Pfam | PF00847 | 1.2E-8 | 264 | 320 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-14 | 264 | 330 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.6E-22 | 265 | 334 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-12 | 265 | 329 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.319 | 265 | 328 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 266 | 277 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.42E-25 | 363 | 424 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-18 | 363 | 424 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.6E-10 | 363 | 414 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.0E-34 | 364 | 428 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-18 | 364 | 423 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.058 | 364 | 422 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 404 | 424 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MGSMNLLGFS LSPQEHPSSQ DHSQTAPSRF CFNPDGISST DVAGDCFDLT SDSTPHLLNL 60 PSYGIYEAFH RSNNIHTTQD WKENYNSQNL LLGTSCNKQN MNQNQQQQPK LENFLGGHSF 120 GEHEQTYGGN SASTDYMFPA QPVSAGGGGS GGGSNNNNNS NSIGLSMIKT WLRNQPPHSE 180 NNNNNNNESG GNSRSSVQQT LSLSMSTGSQ SSTSLPLLTA SVDNGESSSD NKQPHTTAAL 240 DTTQTGAIET APRKSIDTFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQTRKGRQGG 300 YDKEEKAARA YDLAALKYWG TTTTTNFPIS HYEKELEEMK HMTRQEYVAS LRRKSSGFSR 360 GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDVAAI KFRGLSAVTN 420 FDMSRYDVKS ILESTTLPIG GAAKRLKDME QVELRVENVH RADQEDHSSI MNSHLTQGII 480 NNYAAGGTTT THHHNWHNAL AFHQPQPCTT IHYPYGQRIN WCKQEQDNSD ASHSLSYSDI 540 HQLQLGNNGT HNFFHTNSGL HPMLSMDSAS IDNSSSSNFV VYDGYGGGGG YNVIPMGTTT 600 TVVASDGDQN PRSNHGFGDN EIKALGYESV YGSTTDPYHA HARNLYYLTQ QQPSSVDAVK 660 ASAYDQGSAC NTWVPTAIPT HAPRSSTSMA LCHGATPFSL LHE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN40494.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM775856 | 0.0 | HM775856.1 Glycine max babyboom 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003552462.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
Swissprot | Q8LSN2 | 1e-146 | BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A445FWJ9 | 0.0 | A0A445FWJ9_GLYSO; AP2-like ethylene-responsive transcription factor BBM2 | ||||
STRING | GLYMA18G47980.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8186 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-131 | AP2 family protein |
Publications ? help Back to Top | |||
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