PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40292.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 317aa    MW: 35374.2 Da    PI: 5.82
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40292.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72.1e-32127183258
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+edp++++itYeg H h
  KHN40292.1 127 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSNEDPDTLIITYEGLHLH 183
                 8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.278121186IPR003657WRKY domain
SuperFamilySSF1182909.68E-27124183IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.9E-30124183IPR003657WRKY domain
SMARTSM007742.1E-35126185IPR003657WRKY domain
PfamPF031064.7E-26127183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVESAMSKTM MEEVVMASSW SEGSEDDDLV RELLDDGSPL LIEPPNTTTK LASSSDDQDQ  60
AFNRFISNIY SGPTISDIEN ALSVTNQRDH HFPQLSSARV SILERGLSKI ENKYTLKIKC  120
FGNGMGDDGY KWRKYGQKSI KNSPNPRSYY RCTNPRCSAK KQVERSNEDP DTLIITYEGL  180
HLHFAYPYFL MGQQQQSHSY PPIKKSKPTS PQAQDQTHRA DYVHEAHQTE EAQSNASMGV  240
MPSSTSLDST LDMAQESLGS QGLLEDMVPF MVRNPSNNVN SAHTKFSCSS YRSPPTSPLW  300
ASTYSTTCYT VGLNSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-201271831571WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40292.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-67AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028240309.10.0probable WRKY transcription factor 49 isoform X2
TrEMBLA0A445JWC00.0A0A445JWC0_GLYSO; Putative WRKY transcription factor 49
STRINGGLYMA07G16040.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-56WRKY DNA-binding protein 49
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]