PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40286.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 620aa    MW: 69625.6 Da    PI: 6.5105
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40286.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.85e-2476176198
                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 f+kvlt sd++++g +++ +k+a+e+     ++k++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+v
  KHN40286.1  76 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSKSTPTQELVAKDLQGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGNNGELRV 172
                 99****************************9555555679************************************************..3489999** PP

                 EEE- CS
          B3  95 kvfr 98 
                 +v+r
  KHN40286.1 173 GVRR 176
                 **98 PP
2Auxin_resp94.81.4e-31202283183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t++ F v+Y+Pr+  s+F+v+v+k+++a+++k+ vGmRfkm+fe+++s+e  +r+sGt+ gv+d++p +W nS+WrsLk
  KHN40286.1 202 ASHAVATQTLFVVYYKPRT--SQFIVSVNKYLEAINQKCNVGMRFKMRFEGDESPEndKRFSGTILGVEDISP-HWVNSNWRSLK 283
                 789***************6..9********************************9833577**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-3867205IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-3869191IPR015300DNA-binding pseudobarrel domain
CDDcd100179.30E-2074176No hitNo description
PfamPF023627.6E-2276176IPR003340B3 DNA binding domain
PROSITE profilePS5086312.04176178IPR003340B3 DNA binding domain
SMARTSM010198.1E-2276178IPR003340B3 DNA binding domain
PfamPF065074.1E-30202283IPR010525Auxin response factor
PfamPF023093.1E-12434597IPR033389AUX/IAA domain
PROSITE profilePS5174525.501510591IPR000270PB1 domain
SuperFamilySSF542775.4E-13513586No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MEQLEVSTNQ ELNQRIPLFK LSSKILCRVV NVHLLAEQET DEVYAQITLV PESNQTEPTS  60
PDPCPAELPR PRVHSFCKVL TASDTSTHGG FSVLRKHATE CLPALDMSKS TPTQELVAKD  120
LQGFEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGNNGEL RVGVRRIAPL  180
QSSMPSSVIS SQSMHLGVLA TASHAVATQT LFVVYYKPRT SQFIVSVNKY LEAINQKCNV  240
GMRFKMRFEG DESPENDKRF SGTILGVEDI SPHWVNSNWR SLKVQWDEPA SFPRPDRVSS  300
WEIEHILACV PTTSSQPAVI KNKRPRQASE VPDLGDTPLA APTFWDAGLT QCDMTQLRVM  360
TESKRSDSSS HMRHHNSKSN NNGISMNQTE ASWLSSPQLY QDTTDDNKSI LAWPISKPHS  420
ERLNNDHFLD QVDKNINKVE AATSYRLFGI DLIDHARNNS LSVENASGVA SECKTDVNHE  480
SDLSKASKEW NQEQLLVSPK ETQSKQVCSR SCTKVQMQGV AVGRAVDLTT LDGYDQLVDE  540
LEKMFDIKGQ LQLRNKWEIV FTDDEGDMML VGDDPWPEFC NMVKRIFICS SQDVHKLSSG  600
SKLPISSMGE IVISLNTTET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-144130449353Auxin response factor 1
4ldw_A1e-144130449353Auxin response factor 1
4ldw_B1e-144130449353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40286.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-124AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529106.10.0auxin response factor 9
RefseqXP_028240317.10.0auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A445JWD60.0A0A445JWD6_GLYSO; Auxin response factor
TrEMBLI1KK130.0I1KK13_SOYBN; Auxin response factor
STRINGGLYMA07G16170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]