PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40251.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 496aa    MW: 54833 Da    PI: 8.9951
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40251.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.24.2e-2499152155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kp+++Wt+ LH+rF+ a++q+ G ekA+Pkti+++m+v+ Lt+e+v+SHLQkYR+
  KHN40251.1  99 KPKVVWTTYLHNRFLLAIKQI-GLEKAVPKTIVRVMNVPNLTRENVASHLQKYRI 152
                 79*******************.********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011012.112139IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23003.0E-4154No hitNo description
SuperFamilySSF466893.23E-1797156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-2598156IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-2299152IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MSADGRSTVI SKSFANGAAQ YILKPFSADD FKDIWRYAKK LSIQNNEGGS VPGDNTSIQD  60
VNSATSSNMN KRKRKYCPRM SSQMNKEGQS EESSRLVKKP KVVWTTYLHN RFLLAIKQIG  120
LEKAVPKTIV RVMNVPNLTR ENVASHLQKY RIFLKKVADK GLLEGLSNRD LRSRFASGLS  180
ASMINDIQAK REKSRVPAQQ FIKRIEHQSG YGGIANVVKP YNNVSSVTNT PLGRLHQFPH  240
PCHKGLNLNT MLHNQRHGSS SNQARLGAQY SSFGSNARAN NIQQNMLGSY ANQPYYAQSS  300
YNNAGVVFPS DGVMGHGLMN FTNGLRGGMN HGANQFMYPN YGSFGNNHNL SNGQGVFAST  360
SNAGEGCSRE LPKENIQGNL TLPQQQLQGN VAENDIGTSI GENNFNQLNE DDFSDLFMML  420
DEMDLNETGE NHNANDFLKS DFSISNHAVE SLEKMGGDDE HANMEPLDRF VMNDVSSGNN  480
SATDEASQHT KKCSCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-2198158464ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40251.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353840.0AC235384.1 Glycine max strain Williams 82 clone GM_WBb0112F14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006588247.10.0two-component response regulator ARR2
RefseqXP_028181491.10.0two-component response regulator ARR2-like
TrEMBLA0A0B2S0N30.0A0A0B2S0N3_GLYSO; Two-component response regulator ARR2
STRINGGLYMA09G27151.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-32response regulator 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]