PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN40205.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 204aa MW: 22784.9 Da PI: 8.8356 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 69.6 | 5.1e-22 | 1 | 42 | 17 | 59 |
ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +Gg+a+DGCgEfmps geegt++al+C+AC CHRnFHR+eve KHN40205.1 1 MGGNATDGCGEFMPS-GEEGTIEALNCSACHCHRNFHRKEVEG 42 7*************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 9.0E-18 | 1 | 43 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.5E-21 | 1 | 40 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.1E-19 | 1 | 40 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 19.388 | 1 | 39 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-29 | 124 | 193 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.87E-18 | 127 | 192 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.5E-27 | 131 | 187 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence Send to blast |
MGGNATDGCG EFMPSGEEGT IEALNCSACH CHRNFHRKEV EGEPSCDYHH LNINRRRHIL 60 GPHKNLLPPE ALGYPTAARS VPPHQMIMPY NIGGIGHHLP SESDEQEDGG GGGGMVQLSS 120 RPISSQQQLV KKRFRTKFSQ EQKDKMLNFA EKVGWKIQKQ EESVVQQFCQ EIGVKRRVLK 180 VWMHNNKHNL AKKNPPTTAA PPPP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 3e-23 | 130 | 189 | 16 | 75 | ZF-HD homeobox family protein |
1wh7_A | 2e-23 | 132 | 189 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN40205.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 8e-83 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006584131.1 | 1e-152 | zinc-finger homeodomain protein 4 | ||||
Refseq | XP_028242012.1 | 1e-152 | zinc-finger homeodomain protein 4-like | ||||
Swissprot | O64722 | 5e-65 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A0B2S4K8 | 1e-151 | A0A0B2S4K8_GLYSO; ZF-HD homeobox protein | ||||
TrEMBL | A0A445K2G3 | 1e-151 | A0A445K2G3_GLYSO; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | I1KNQ9 | 1e-151 | I1KNQ9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G40190.1 | 1e-151 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14440.2 | 1e-65 | homeobox protein 31 |
Publications ? help Back to Top | |||
---|---|---|---|
|