PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40119.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 173aa    MW: 19773.3 Da    PI: 10.1536
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40119.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000141767655
                HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                + + r+RR +++s  ++  + +P+ + k+++  l   + L +A  YIk+L+
  KHN40119.1 17 KTIQRNRRIHMKSLCFKYLSSIPSnDLKPTKDMLYQQDQLDLAATYIKHLK 67
                6789********************876666666****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-61385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-51578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MIKTNTSTSG SPKLHRKTIQ RNRRIHMKSL CFKYLSSIPS NDLKPTKDML YQQDQLDLAA  60
TYIKHLKERI QKLKGEKEIF NIGSQLPLIE IKDLGLGIGV MLISGLNKNL MLYEVISVLE  120
EDGAEVVTVA WGLAVLGNLI ESKRGGYIMH FRQHYLCYIG RVWKKRLDLT GKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40119.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959832e-80BT095983.1 Soybean clone JCVI-FLGm-15G16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525498.18e-71transcription factor bHLH162
RefseqXP_028231504.18e-71transcription factor bHLH162-like
TrEMBLA0A0B2S7701e-124A0A0B2S770_GLYSO; Uncharacterized protein
STRINGGLYMA05G02110.23e-70(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-14bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]