PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN39963.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 179aa MW: 20133.4 Da PI: 9.4235 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.5 | 1.4e-16 | 79 | 114 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ +g KHN39963.1 79 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANRG 114 *****99999**********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51017 | 12.6 | 11 | 53 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.7E-16 | 11 | 53 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 10.211 | 73 | 124 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.2E-15 | 73 | 126 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.85E-12 | 75 | 125 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.4E-16 | 77 | 120 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.00E-13 | 78 | 124 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 79 | 106 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.7E-14 | 79 | 114 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MEFPKCSLPH RAASLHRFRQ KRKERCFDKK VRYSVRQEVA LRMHRNKGQF TSSKKQDGAN 60 SYGTDQDSGQ DDSQSETSCT HCGISSKSTP MMRRGPSGPR SLCNACGLFW ANRGALRDLS 120 KRNQEHSLPP VEQVDEGNDS DCRTATADPA HNNLPAFSEH DNPALVADHK VFQSQKMLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN39963.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003544834.1 | 1e-132 | GATA transcription factor 25 | ||||
Refseq | XP_028198286.1 | 1e-132 | GATA transcription factor 25-like | ||||
Swissprot | Q9LRH6 | 2e-69 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | A0A445H7H9 | 1e-131 | A0A445H7H9_GLYSO; GATA transcription factor 25 | ||||
TrEMBL | I1MB13 | 1e-131 | I1MB13_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G36150.1 | 1e-131 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2836 | 33 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 1e-64 | GATA-type zinc finger protein with TIFY domain |
Publications ? help Back to Top | |||
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