PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39845.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 328aa    MW: 36832.7 Da    PI: 7.4354
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39845.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.6e-2576120145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  KHN39845.1  76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVES 120
                 79****************************************986 PP
2QLQ57.73.6e-201147137
         QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                s+FT +Q+q+L++Q+l++Ky++a++PvP +L+++iq+
  KHN39845.1 11 SPFTVSQWQELEHQALIFKYMLAGLPVPLDLVFPIQN 47
                89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.8E-111147IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.3081247IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.7E-151246IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76276120IPR014977WRC domain
PfamPF088792.9E-2177119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGLSNGYCGR SPFTVSQWQE LEHQALIFKY MLAGLPVPLD LVFPIQNSFH STISLSHAFF  60
HHPTLSYCSF YGKKVDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG RNRSRKPVES  120
QTMTHSSSTV TSLTVTGGSG ASKGTVNFQN LSTNTFGNLQ GTDSGTDHTN YHLDSIPYAI  180
PSKEYRYVQG LKSEGGEHCF FSEASGSNKV LQMESQLENT WPLMSTRVAS FSTSKSSNDS  240
LLHSDYPRHS FLSGEYVSGE HVKEEGQPLR PFFNEWPKSR ESWSGLEDER SNQTAFSTTQ  300
LSISIPMSSN FSATSSQSPH GEDEIQFR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN39845.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352640.0AC235264.1 Glycine max strain Williams 82 clone GM_WBb0041H18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539001.10.0growth-regulating factor 5
RefseqXP_028188501.10.0growth-regulating factor 5-like
SwissprotQ6AWY47e-87GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA0A445I0E70.0A0A445I0E7_GLYSO; Growth-regulating factor 5 isoform A
TrEMBLK7LP510.0K7LP51_SOYBN; Uncharacterized protein
STRINGGLYMA11G11826.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-45growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]