PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN39704.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 378aa MW: 43479.9 Da PI: 7.9391 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52.9 | 1.2e-16 | 27 | 103 | 12 | 90 |
FAR1 12 FsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 F+ +k +ks+ ng +++r+++C ++g++ +++ + r+ ++etrtgC a+++++++ +gk++v+++e+eHnHel+ KHN39704.1 27 FQHKKGFVNKSRINGAVVSRRYTCHRQGYHPNKNGT--YLRKLKQETRTGCLAHMTISRQPNGKFCVINFETEHNHELV 103 8888888999*******************9998877..99999**********************************97 PP | |||||||
2 | FAR1 | 84 | 2.4e-26 | 150 | 238 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA +vGFsvrk++ ++sk +g++ +r f+C +eg+r+++k++ + +r+++ tr+gC a+l+++++ dg+++v+++e++H Hel+ KHN39704.1 150 EFYNAYAGHVGFSVRKDYVNRSKVDGTVASRPFTCFREGFRHKDKQD-MNVKRPQKDTRIGCLAQLVISRRPDGRYNVSNFEEKHHHELV 238 6*******************************************999.999*************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.9E-14 | 27 | 103 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 2.2E-23 | 150 | 238 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MEDAENECPI SPEVVIDMGQ ESQTQKFQHK KGFVNKSRIN GAVVSRRYTC HRQGYHPNKN 60 GTYLRKLKQE TRTGCLAHMT ISRQPNGKFC VINFETEHNH ELVTPCTIHM LPSQKRLTFA 120 QAVEANLTES GFSGVPKLGM RFDFEEHAYE FYNAYAGHVG FSVRKDYVNR SKVDGTVASR 180 PFTCFREGFR HKDKQDMNVK RPQKDTRIGC LAQLVISRRP DGRYNVSNFE EKHHHELVAA 240 CRVHMLRSQK RLATTQVEKN AVDGSNLLPT STSESNCKAI ELKAFVNLDC DPMGHESEAI 300 NNILPQTNHQ ISVWHVYQDS VKQLSHVSVG FVSFVNDLRS CFFDHEEEYY VVNAWNALLD 360 KYDLQQNEWL QQIYGSRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN39704.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006579692.1 | 1e-171 | protein FAR1-RELATED SEQUENCE 7 isoform X2 | ||||
Refseq | XP_028231890.1 | 1e-171 | protein FAR1-RELATED SEQUENCE 7-like isoform X2 | ||||
TrEMBL | A0A0B2S5Z7 | 0.0 | A0A0B2S5Z7_GLYSO; Protein FAR1-RELATED SEQUENCE 7 | ||||
STRING | GLYMA05G06351.1 | 1e-170 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 2e-24 | FAR1-related sequence 7 |
Publications ? help Back to Top | |||
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