PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN39632.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 571aa MW: 63048.9 Da PI: 6.4278 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.7 | 5.2e-12 | 244 | 300 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aaka++ a++k++g KHN39632.1 244 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAAKAYDLAALKYWG 300 78*******************433.44555535555.779999**************98 PP | |||||||
2 | AP2 | 48.1 | 2.9e-15 | 343 | 394 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g KHN39632.1 343 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 394 78****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.29E-14 | 244 | 310 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.95E-18 | 244 | 310 | No hit | No description |
Pfam | PF00847 | 6.1E-9 | 244 | 300 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-22 | 245 | 314 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.108 | 245 | 308 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-12 | 245 | 309 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-6 | 246 | 257 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.61E-25 | 343 | 404 | No hit | No description |
Pfam | PF00847 | 5.8E-10 | 343 | 394 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 343 | 404 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.6E-34 | 344 | 408 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.006 | 344 | 402 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-18 | 344 | 402 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-6 | 384 | 404 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MSNWLGFSLT PHLRIDEEFE RENQERGGGY HHPSPSCHPH LSVMPLRSDG SLCVADSFSH 60 SAASQEWRYD SAIGGGNSNE EGPKLEDFLG CYSNSPAKVF CQDSQPDQNQ SQNNVSKINV 120 NVAPSFCTNN SEIETGDNLT NPSSLLHSFH AYNDNSHALI PTNGMYKSWL AQTQFSSDGK 180 PSNEANGCNF QSLSLTMSPS VQNGVGAISS VQVNEDSRKR VMAKSHAREP VPRKSIDTFG 240 QRTSQYRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQGG YDKEEKAAKA YDLAALKYWG 300 PTTHINFPLS TYEKELEEMK HMTRQEFVAN LRRKSSGFSR GASVYRGVTR HHQHGRWQAR 360 IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN FDISRYDVKR ICSSSTLIAG 420 DLAKRSPKES PAPVPASDFN SCGSSPMPLV SQPPPLAITD GEHSDELSNM MWNANNSDEQ 480 AQNESGGAEF NNNVTESSSS QQVSPSSNKD ALNPQSPNEF GVSGADYGHG YFTLDGPKYD 540 DGNNENDHMS TNRLGNLGLV NQVPMFALWN E |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN39632.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235913 | 0.0 | AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014624720.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 isoform X2 | ||||
Refseq | XP_028206125.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 isoform X2 | ||||
Swissprot | Q1PFE1 | 1e-134 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A0R0FVV5 | 0.0 | A0A0R0FVV5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G00950.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10274 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-117 | AP2 family protein |
Publications ? help Back to Top | |||
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