PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39632.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 571aa    MW: 63048.9 Da    PI: 6.4278
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39632.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.2e-12244300155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aaka++ a++k++g
  KHN39632.1 244 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAAKAYDLAALKYWG 300
                 78*******************433.44555535555.779999**************98 PP

2AP248.12.9e-15343394155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  KHN39632.1 343 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 394
                 78****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-14244310IPR016177DNA-binding domain
CDDcd000182.95E-18244310No hitNo description
PfamPF008476.1E-9244300IPR001471AP2/ERF domain
SMARTSM003802.1E-22245314IPR001471AP2/ERF domain
PROSITE profilePS5103217.108245308IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-12245309IPR001471AP2/ERF domain
PRINTSPR003671.3E-6246257IPR001471AP2/ERF domain
CDDcd000184.61E-25343404No hitNo description
PfamPF008475.8E-10343394IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18343404IPR016177DNA-binding domain
SMARTSM003803.6E-34344408IPR001471AP2/ERF domain
PROSITE profilePS5103219.006344402IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18344402IPR001471AP2/ERF domain
PRINTSPR003671.3E-6384404IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIDEEFE RENQERGGGY HHPSPSCHPH LSVMPLRSDG SLCVADSFSH  60
SAASQEWRYD SAIGGGNSNE EGPKLEDFLG CYSNSPAKVF CQDSQPDQNQ SQNNVSKINV  120
NVAPSFCTNN SEIETGDNLT NPSSLLHSFH AYNDNSHALI PTNGMYKSWL AQTQFSSDGK  180
PSNEANGCNF QSLSLTMSPS VQNGVGAISS VQVNEDSRKR VMAKSHAREP VPRKSIDTFG  240
QRTSQYRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQGG YDKEEKAAKA YDLAALKYWG  300
PTTHINFPLS TYEKELEEMK HMTRQEFVAN LRRKSSGFSR GASVYRGVTR HHQHGRWQAR  360
IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN FDISRYDVKR ICSSSTLIAG  420
DLAKRSPKES PAPVPASDFN SCGSSPMPLV SQPPPLAITD GEHSDELSNM MWNANNSDEQ  480
AQNESGGAEF NNNVTESSSS QQVSPSSNKD ALNPQSPNEF GVSGADYGHG YFTLDGPKYD  540
DGNNENDHMS TNRLGNLGLV NQVPMFALWN E
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN39632.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359130.0AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624720.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X2
RefseqXP_028206125.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X2
SwissprotQ1PFE11e-134AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A0R0FVV50.0A0A0R0FVV5_SOYBN; Uncharacterized protein
STRINGGLYMA16G00950.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-117AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]