PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39631.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 373aa    MW: 42219.4 Da    PI: 8.4556
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39631.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.94.7e-2578122145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e 
  KHN39631.1  78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEV 122
                 79****************************************985 PP
2QLQ52.21.9e-181247136
         QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                s+FT +Q+q+L++Q+l++Ky++ + P+Pp+L+  i+
  KHN39631.1 12 SPFTQTQWQELEQQALVFKYMVTGTPIPPDLIYSIK 47
                89*****************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.8E-111248IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.681348IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-131346IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.32578122IPR014977WRC domain
PfamPF088793.5E-2179121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MMSASAGARN RSPFTQTQWQ ELEQQALVFK YMVTGTPIPP DLIYSIKRSL DTSISSRLFP  60
HHPIGWGCFE MGFGRKVDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV  120
EVSSATSTAT NTSQTIPSSY TRNLSLTNNS NPNITPPPPP SSFPFSHLPS SMPIDQSQPF  180
SQSYQNSSLN PFFYSQSTSS RPPDADFPPQ DATTHHLFMD SAGSYSHDEK NYRHVHGIRE  240
DVDERAFFPE ASGSARSYTD SYQQLSMSSY KSYSNSNFQN INNDATTNPR QQEQQLQQQQ  300
HCFVLGTDFK STRPSKEKEA ETTTGQRPLH RFFGEWPPKN TTTDSWLDLA SNSRIQTGDD  360
PASSSLLSLS HPF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN39631.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359130.0AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028206536.10.0growth-regulating factor 5-like isoform X2
TrEMBLA0A445GCH90.0A0A445GCH9_GLYSO; Growth-regulating factor 5
STRINGGLYMA16G00971.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-63growth-regulating factor 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]