PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39626.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 265aa    MW: 29793.5 Da    PI: 5.0556
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39626.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS153.22.4e-471253123374
        GRAS 123 lQWpaLlqaLasRp.egppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrl 213
                 +QWp++l+aL+ Rp ++pp +R+T+v +++s+             +  +rL  fA++++v++++n l    l++l+ ++ +++p+E  +V+ +++lh+l
  KHN39626.1   1 MQWPTFLEALSRRPgGPPPLVRLTVVTASSSTendtpfcIGPPGDNFSSRLLGFAQSMNVNLQINKLDNCPLHTLNAQSVDTSPDEIFVVCAQFRLHQL 99 
                 8*************55566*******99888888888877788999********************9777***************************** PP

        GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadh..n.sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh 309
                     ++ ++er+e+Lk++++++Pk v+++++++ +  n  ++F ++f++ +ey + ++ds+++ +    + r + Er++++ e+ ++++++ +     +
  KHN39626.1 100 N---HNAPDERSEFLKVLRNMEPKGVILSDNNMGCccNcCGDFTTGFSRRVEYLWRFLDSTSSAF----KGRESEERRVMEGEAAKALTNQRET----N 187
                 8...66666778********************8775431469*******************6665....5566666666666688888776665....9 PP

        GRAS 310 etlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 e +ekW er++eaGF    ++e+a +  ++llrk++ +++++ve+++ s+ l Wk++++ ++S W+
  KHN39626.1 188 EGKEKWCERMKEAGFVGEVFGEDAIDGGRALLRKYDgNWEMKVEDDNTSVGLWWKGQSVSFCSLWK 253
                 ************************************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.6031232IPR005202Transcription factor GRAS
PfamPF035148.3E-451253IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MQWPTFLEAL SRRPGGPPPL VRLTVVTASS STENDTPFCI GPPGDNFSSR LLGFAQSMNV  60
NLQINKLDNC PLHTLNAQSV DTSPDEIFVV CAQFRLHQLN HNAPDERSEF LKVLRNMEPK  120
GVILSDNNMG CCCNCCGDFT TGFSRRVEYL WRFLDSTSSA FKGRESEERR VMEGEAAKAL  180
TNQRETNEGK EKWCERMKEA GFVGEVFGED AIDGGRALLR KYDGNWEMKV EDDNTSVGLW  240
WKGQSVSFCS LWKLDGNYKT STFTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-182253158419Protein SHORT-ROOT
5b3h_E3e-182253158419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN39626.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548366.10.0nodulation-signaling pathway 1 protein
RefseqXP_028206083.10.0nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC81e-156NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A445GCP00.0A0A445GCP0_GLYSO; Nodulation-signaling pathway 1 protein
TrEMBLI1MK090.0I1MK09_SOYBN; Uncharacterized protein
STRINGGLYMA16G01020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.12e-89GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]