PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN39540.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 877aa MW: 98948.7 Da PI: 7.0102

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN39540.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.5	2.5e-14	56	130	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYneY+k+vGFs + + +s+ +g + r+f C +e ++++ ++ C+a+++++++ ++kw+vtk+ +eH+H++a KHN39540.1 56 FYNEYGKRVGFSCKAGPHGRSTADGANMFREFLCGREDSKRKPPES--------------CNAMIRIEQNGQNKWVVTKFIKEHSHSMA 130 *********************************99988887777..............************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-11	56	130	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-28	272	364	IPR018289	MULE transposase domain
Pfam	PF04434	6.5E-11	550	584	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.226	550	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence Send to blast
MGEGSDHQAM ADNGNAESGE GGVRSAENNS GSHVRVGVSE PYVGREFDSQ DAAKTFYNEY 60 GKRVGFSCKA GPHGRSTADG ANMFREFLCG REDSKRKPPE SCNAMIRIEQ NGQNKWVVTK 120 FIKEHSHSMA SVSKVHNIRP RKPFSSVGRT MPETYQGVGL VPSGMMYVSM DKNCIPTKNI 180 QGIKNTPAAV AVAETYQPVK SPTMMNYAVR PATRKRTLGK DAHNLLEYFK KMQAENPGFF 240 YAIQLDEDNH MSNVFWADAR SRTAYSHFGD AVTLDTTYRI TQYGVPFAPF TGVNHHGQMI 300 LFGCALLLDD SEASFVWLFK TFLTAMNEHY PVSITTDQDR AIQTAVSQVF PQTRHCISKW 360 HVLREGHEKV AHVCNMHPNF QIELYNCINL TETIEEFDSS WNFIINKYEL TKNDWLQSLY 420 SARAQWVPAY FRDSFFAAIS PNQGFDGSYF YGFVNHQTTL PLFFRQYEQA LECWFEKELE 480 SDYDTICTTP VLKTPSPMEK QAANLYTRKI FSKFQEELVE TFAYTANRIE EDGENSIFRV 540 AKFEDDQKVY IVTLNLSELR ANCSCQMFEY SGILCRHVLT VFTVTNVLTL PSHYILKRWT 600 RNSKSSAGSV ELADESHGPK SLTSRYSNLC WEAIKYAEEG ALTVETYDTA ISALRESGKK 660 ISFMRRSVAK VAPPSHPVSG TAYDDRKSPT SAADTNPLLW PLQDETTQRF NLNDDSTPVQ 720 SVADLNLPQM TPVSLQRDDG PPEMVVYPCL KSLTWVMENK NSTPGNRVAV ISLKLQDYSR 780 IPSTESEVRF NLSKVTLEPL FNHMVNISDQ LSIPTRKFAV LNLKLPVAET TSGASEVKFQ 840 VSKDTLGAVL RSMAYIREQL LGPGDVQTEP MSKRPRK

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence Send to blast

MGEGSDHQAM ADNGNAESGE GGVRSAENNS GSHVRVGVSE PYVGREFDSQ DAAKTFYNEY  60
GKRVGFSCKA GPHGRSTADG ANMFREFLCG REDSKRKPPE SCNAMIRIEQ NGQNKWVVTK  120
FIKEHSHSMA SVSKVHNIRP RKPFSSVGRT MPETYQGVGL VPSGMMYVSM DKNCIPTKNI  180
QGIKNTPAAV AVAETYQPVK SPTMMNYAVR PATRKRTLGK DAHNLLEYFK KMQAENPGFF  240
YAIQLDEDNH MSNVFWADAR SRTAYSHFGD AVTLDTTYRI TQYGVPFAPF TGVNHHGQMI  300
LFGCALLLDD SEASFVWLFK TFLTAMNEHY PVSITTDQDR AIQTAVSQVF PQTRHCISKW  360
HVLREGHEKV AHVCNMHPNF QIELYNCINL TETIEEFDSS WNFIINKYEL TKNDWLQSLY  420
SARAQWVPAY FRDSFFAAIS PNQGFDGSYF YGFVNHQTTL PLFFRQYEQA LECWFEKELE  480
SDYDTICTTP VLKTPSPMEK QAANLYTRKI FSKFQEELVE TFAYTANRIE EDGENSIFRV  540
AKFEDDQKVY IVTLNLSELR ANCSCQMFEY SGILCRHVLT VFTVTNVLTL PSHYILKRWT  600
RNSKSSAGSV ELADESHGPK SLTSRYSNLC WEAIKYAEEG ALTVETYDTA ISALRESGKK  660
ISFMRRSVAK VAPPSHPVSG TAYDDRKSPT SAADTNPLLW PLQDETTQRF NLNDDSTPVQ  720
SVADLNLPQM TPVSLQRDDG PPEMVVYPCL KSLTWVMENK NSTPGNRVAV ISLKLQDYSR  780
IPSTESEVRF NLSKVTLEPL FNHMVNISDQ LSIPTRKFAV LNLKLPVAET TSGASEVKFQ  840
VSKDTLGAVL RSMAYIREQL LGPGDVQTEP MSKRPRK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN39540.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235227	0.0	AC235227.1 Glycine max strain Williams 82 clone GM_WBb0025G03, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028200800.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A0B2S2Q6	0.0	A0A0B2S2Q6_GLYSO; Protein FAR1-RELATED SEQUENCE 3
STRING	GLYMA14G04820.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]