PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39501.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 644aa    MW: 73440.7 Da    PI: 4.8435
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39501.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.26.3e-5751321128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v s + 
  KHN39501.1   5 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNS-QA 101
                 79****************************.99***************6434445667**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 ++vg+kktLv+y+grap+g++t+Wvmheyrl
  KHN39501.1 102 RAVGMKKTLVYYRGRAPHGSRTNWVMHEYRL 132
                 99***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-643155IPR003441NAC domain
PROSITE profilePS5100561.7095155IPR003441NAC domain
PfamPF023651.1E-306132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MAPVLPPGFR FHPTDEELVA YYLKRKINGR KIELEIIPEV DLYKCEPWDL PGKSLLPGKD  60
LEWYFFSPRD RKYPNGSRTN RATKSGYWKA TGKDRKVNSQ ARAVGMKKTL VYYRGRAPHG  120
SRTNWVMHEY RLDERECETN SGLQDAYALC RVVKKTAVIP PKVGGHYVNV PNANKITSDQ  180
SSSIELYSEG RHEDLDSSNY LMSMDICSPC NMGNDQTSLT INSGMTRDLE KWSHFSSQDP  240
LFSLPTSSSF SNFGAIAYPP SKVDIALECA RMQHRFVMPP LEVDDFPQVG VSELKMAQAS  300
GSMQGSCRTE TDILQEILSV AQVSQELINQ SSYSQDWGGN DNYAPREDDF TFMVGTNYNH  360
SNEMSSMRYV DKTWEDAINT RTIEIGDVDE EFKEERMVEN LRWVGMSSED LEKMQEQKIV  420
PIEDISSFQT NREENEVQES EQQNNKEHND TEINDFSLGF INDDDPNKNF IEDGNMDDYS  480
SSPSFEVVEE IKVNHGMLVS TRQVVETFFH QIVPSQTVQV HLINSVMAHN HYVENAEAML  540
MIMENQGSLL RNKVKAYVMG KLIKPSKTIA SAIVFIFAFV LMHCVYLKEE VEIWNESNNE  600
VWFVGVKSHD EKGLSAILKK IGIFLTISLA LCTMWANQNM IVNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-57515720170NAC domain-containing protein 19
3swm_B1e-57515720170NAC domain-containing protein 19
3swm_C1e-57515720170NAC domain-containing protein 19
3swm_D1e-57515720170NAC domain-containing protein 19
3swp_A1e-57515720170NAC domain-containing protein 19
3swp_B1e-57515720170NAC domain-containing protein 19
3swp_C1e-57515720170NAC domain-containing protein 19
3swp_D1e-57515720170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN39501.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-145AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544352.10.0NAC domain-containing protein 86
RefseqXP_028199803.10.0NAC domain-containing protein 86-like
TrEMBLA0A445H8Y10.0A0A445H8Y1_GLYSO; NAC domain-containing protein 86
TrEMBLI1MBR00.0I1MBR0_SOYBN; Uncharacterized protein
STRINGGLYMA14G39080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-158NAC domain containing protein 28
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]