PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN39309.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 498aa MW: 54537.3 Da PI: 8.907

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN39309.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H KHN39309.1 87 FICEICNKGFQRDQNLQLHRRGH 109 89*******************88 PP
2	zf-C2H2	12.1	0.00058	163	185	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ KHN39309.1 163 WKCDKCSKKYAVQSDWKAHSKTC 185 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.2E-7	86	109	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	86	109	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	6.0E-5	87	109	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	87	109	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	87	109	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	89	109	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	128	158	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.2E-4	151	184	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.2E-7	158	183	No hit	No description
SMART	SM00355	150	163	183	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MEMKGFMFYQ QQQQQQIVEE NMSNLTSASG EASASSGNRT EIGTSYMAPP PTQIQPPKKK 60 RNLPGNPDPD AEVMALSPKS LLATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS 120 KEVRKKVYVC PEPSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA 180 HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAEESAR AIANPLLPPQ QQQSSSSHMS 240 TLQTQFNPQN LHAFPLKKEM PPWLGPPATV VVDHHLSSSS SIMFSPPHQE NPNPSLGPTL 300 AAYQTVPNPH MSATALLQKA AQMGATMSRS GSTPAMTGPH HHAHVSHFGL NLSSREDTTT 360 TTPSTTTTNA NTATVFSHGL LSSSPLGNKA AAAAAVSSSA PSLLHDVINS FSSPSAFEGT 420 PFEDAFIQSS KKLDDDHNLY LHDTFSKTSG AAGNNINEGL TRDFLGLRPL SHADILTIAG 480 IGNCIHDQQN QSQKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MEMKGFMFYQ QQQQQQIVEE NMSNLTSASG EASASSGNRT EIGTSYMAPP PTQIQPPKKK  60
RNLPGNPDPD AEVMALSPKS LLATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS  120
KEVRKKVYVC PEPSCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA  180
HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAEESAR AIANPLLPPQ QQQSSSSHMS  240
TLQTQFNPQN LHAFPLKKEM PPWLGPPATV VVDHHLSSSS SIMFSPPHQE NPNPSLGPTL  300
AAYQTVPNPH MSATALLQKA AQMGATMSRS GSTPAMTGPH HHAHVSHFGL NLSSREDTTT  360
TTPSTTTTNA NTATVFSHGL LSSSPLGNKA AAAAAVSSSA PSLLHDVINS FSSPSAFEGT  420
PFEDAFIQSS KKLDDDHNLY LHDTFSKTSG AAGNNINEGL TRDFLGLRPL SHADILTIAG  480
IGNCIHDQQN QSQKPWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-36	159	220	3	64	Zinc finger protein JACKDAW
5b3h_F	9e-36	159	220	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	125	KLKQRTSKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN39309.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006583009.1	0.0	protein indeterminate-domain 7
Refseq	XP_006583010.1	0.0	protein indeterminate-domain 7
Refseq	XP_028238807.1	0.0	protein indeterminate-domain 7-like
Refseq	XP_028238808.1	0.0	protein indeterminate-domain 7-like
Swissprot	Q9LRW7	1e-132	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A445JQH4	0.0	A0A445JQH4_GLYSO; Protein indeterminate-domain 11 isoform A
TrEMBL	I1KGB5	0.0	I1KGB5_SOYBN; Uncharacterized protein
STRING	GLYMA07G01130.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-104	indeterminate(ID)-domain 7

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]