PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39273.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 431aa    MW: 47106.4 Da    PI: 5.2615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39273.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.4e-09347387954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+riN+++  L++l+P        K++ a++L +A +Y+k L
  KHN39273.1 347 ARHRRERINEKIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 387
                 599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.364338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-14344400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.88E-11344392No hitNo description
Gene3DG3DSA:4.10.280.108.1E-13346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-6348387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016787Molecular Functionhydrolase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDGLSWDASQ LWGTIQQPPV FGGGYSMPLN VLNQIQEMQK AQTGHVFSNS ERAIYQSAGA  60
TTTSSEIMDV MQKQDKNLSQ HVSTMPVKPG AGASWGETLT SQSYPSLSVN GPHSMNLISN  120
YTPDFNMAHH QQLVNGSQNG KGGCSLEPFD CLISATNSNT DTSVEDDDGI SMILSDCGNL  180
WSNFSYGSAA STGESESNAS NGRNKDMQCP VNEVDETVSQ TVESEANCSK RSHDQSKMIQ  240
VGDSCFSIVQ NSSPIEEGGF RLISDNPPEC KKPRWDMSSS SNNINFQQPN SSISSSIEEP  300
DPEAIAQMKE MIYRAAAFRP VNFGLEVVEK LKRKNVKIST DPQTVAARHR RERINEKIRV  360
LQKLVPGGSK MDTASMLDEA ANYLKFLRSQ VKALESLGNK VDAMNCPPTS IAFSFNPSFP  420
MQTPLSHIHH S
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN39273.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014633121.10.0transcription factor bHLH87
RefseqXP_028240383.10.0transcription factor bHLH87-like
SwissprotQ8S3D23e-82BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A445JQT00.0A0A445JQT0_GLYSO; Transcription factor bHLH87 isoform A
TrEMBLK7KZ030.0K7KZ03_SOYBN; Uncharacterized protein
STRINGGLYMA07G01611.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]