PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN39228.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

CAMTA

Protein Properties

Length: 1079aa MW: 121228 Da PI: 6.0457

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN39228.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	181	1.4e-56	21	136	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 + ++rwl++ ei++iL n++ +++t+e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fqrr+yw+ KHN39228.1 21 EAQHRWLRPAEICEILRNYRMFQITSEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWM 119 349********************************************************************************************** PP CG-1 102 Leeelekivlvhylevk 118 Le ++ +iv+vhyl+vk KHN39228.1 120 LELDMMHIVFVHYLDVK 136 ************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.157	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.0E-82	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.4E-50	21	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	4.1E-5	493	581	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	7.0E-6	495	580	IPR002909	IPT domain
SuperFamily	SSF81296	1.17E-16	495	581	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.38E-15	685	789	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.2E-15	689	790	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.08E-12	693	783	No hit	No description
PROSITE profile	PS50297	16.573	695	803	IPR020683	Ankyrin repeat-containing domain
SMART	SM00015	4.2	902	924	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.206	903	932	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	7.43E-7	904	953	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00612	0.0075	905	923	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0071	925	947	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.285	926	950	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.3E-4	928	947	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071275	Biological Process	cellular response to aluminum ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0016874	Molecular Function	ligase activity

Sequence ? help Back to Top
Protein Sequence Length: 1079 aa Download sequence Send to blast
MSERSSFGLG PRLDLQQLQL EAQHRWLRPA EICEILRNYR MFQITSEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEENE NFQRRSYWML 120 ELDMMHIVFV HYLDVKVNKT NIGGKTYSDE VTSDSQKSSS LSSGFPRNYG SVPSGSTDSM 180 SPTSTLTSLC EDADSEDIHQ ASSGLHSYRE SQNLGNDRPM DKIHARSNSS YLMHPFSDNH 240 GQLPVSGAEY IPHVQGNKSR ASDTTYIEGQ RAHGIASWDN AMEQSAGKHA DPSLVSSTSI 300 PSSAMGNILD KNHTVPGNLL GHKIALTEVE RGAQPVQSNW QIPFEDNTGE LPNWGFTQSL 360 GLEFGSDYGT SLLGDVTNNA GPEIDPELFT FNGELKEQYT HGQSQPALKS NSAYEVPGEA 420 SINYALTMRR GLLDGEESLK KVDSFSRWMT KELAGVDDLH MQSSPGISWS TDECGDVIDD 480 TSLHLSLSQD QLFSINDFSP KWAYAESEIE VLIVGTFLKS QPVVAKCNWS CMFGEVEVPA 540 EVLADGILCC QAPPHKIGRV PFYVTCSNRF ACSEVREFEY REGFDRNINF PDFFNNSSEM 600 ELHLRLVGLL SLNSMHTLNQ VFEGDMDKRN LIFKLISLKE EEEYSSKEET TAEMDISQQK 660 LKEHMFHKQV KEKLYSWLLH KVTETGKGPL VLDEEGQGVL HLIAALGYDW AINPIITAGV 720 NINFRDVNGW TALHWAAFCG RERTVAVLVS MDAAAGALTD PCPEFPLGRT PADLASSKGH 780 KGISGFLAES LLTSHLESLT MDENKDGRKE TSGMKVVQTV SERTATPVLN GDIPDDICLK 840 DSLNAVRNAT QAADRIYQVF RMQSFQRKQL ALYEDDEFGL SDQQALSLLA SKACRSGQGE 900 GLANAAAIQI QKKFRGWTKR KEFLIIRQRI VKIQAHVRGH QVRKQYKPII WSVGILEKVI 960 LRWRRKGSGL RGFRPASQNK VPEQPSESPK QDDYDYLKEG RKQSEVKFKK ALSRVKSMVQ 1020 YPEARAQYRR VLNVVEDFRQ TKGGNLNLIN SEETVDGVED LIDIDMLLDD ENFLPIAFD

Sequence ? help Back to Top

Protein Sequence Length: 1079 aa Download sequence Send to blast

MSERSSFGLG PRLDLQQLQL EAQHRWLRPA EICEILRNYR MFQITSEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEENE NFQRRSYWML  120
ELDMMHIVFV HYLDVKVNKT NIGGKTYSDE VTSDSQKSSS LSSGFPRNYG SVPSGSTDSM  180
SPTSTLTSLC EDADSEDIHQ ASSGLHSYRE SQNLGNDRPM DKIHARSNSS YLMHPFSDNH  240
GQLPVSGAEY IPHVQGNKSR ASDTTYIEGQ RAHGIASWDN AMEQSAGKHA DPSLVSSTSI  300
PSSAMGNILD KNHTVPGNLL GHKIALTEVE RGAQPVQSNW QIPFEDNTGE LPNWGFTQSL  360
GLEFGSDYGT SLLGDVTNNA GPEIDPELFT FNGELKEQYT HGQSQPALKS NSAYEVPGEA  420
SINYALTMRR GLLDGEESLK KVDSFSRWMT KELAGVDDLH MQSSPGISWS TDECGDVIDD  480
TSLHLSLSQD QLFSINDFSP KWAYAESEIE VLIVGTFLKS QPVVAKCNWS CMFGEVEVPA  540
EVLADGILCC QAPPHKIGRV PFYVTCSNRF ACSEVREFEY REGFDRNINF PDFFNNSSEM  600
ELHLRLVGLL SLNSMHTLNQ VFEGDMDKRN LIFKLISLKE EEEYSSKEET TAEMDISQQK  660
LKEHMFHKQV KEKLYSWLLH KVTETGKGPL VLDEEGQGVL HLIAALGYDW AINPIITAGV  720
NINFRDVNGW TALHWAAFCG RERTVAVLVS MDAAAGALTD PCPEFPLGRT PADLASSKGH  780
KGISGFLAES LLTSHLESLT MDENKDGRKE TSGMKVVQTV SERTATPVLN GDIPDDICLK  840
DSLNAVRNAT QAADRIYQVF RMQSFQRKQL ALYEDDEFGL SDQQALSLLA SKACRSGQGE  900
GLANAAAIQI QKKFRGWTKR KEFLIIRQRI VKIQAHVRGH QVRKQYKPII WSVGILEKVI  960
LRWRRKGSGL RGFRPASQNK VPEQPSESPK QDDYDYLKEG RKQSEVKFKK ALSRVKSMVQ  1020
YPEARAQYRR VLNVVEDFRQ TKGGNLNLIN SEETVDGVED LIDIDMLLDD ENFLPIAFD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00043	PBM	Transfer from AT5G64220	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN39228.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028243095.1	0.0	calmodulin-binding transcription activator 2-like isoform X1
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A0B2S3K7	0.0	A0A0B2S3K7_GLYSO; Calmodulin-binding transcription activator 2
STRING	GLYMA08G07680.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7406	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]