PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN39172.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 503aa MW: 55699.6 Da PI: 6.0977 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.4e-30 | 253 | 312 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ +d +++++tYeg+Hnh+ KHN39172.1 253 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCIDDMSILITTYEGTHNHP 312 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-32 | 238 | 314 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-28 | 246 | 314 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.207 | 248 | 314 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-37 | 253 | 313 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-27 | 254 | 312 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MGRSREKPSK MEIDLSLKID TDDEHNEEVD ERVKEDNEEE MAQTPDNNKE LEVHEATAGE 60 IEDDASVVET SLQDNTKAKE LSVLQMEMES MKEENKVLRK VVEQTMKDYY NLQMKFSAIQ 120 ENNKRKDHEI SLSLQDIATT SGEGPSRINE IFNKQIRQSA PSPPHTTDHD DSLSESELGL 180 SLRLQPSTSH HKESNVGNNN KEDKNDQQLA SFASVQNKLQ RTHELPGITT HAAFPPNRKA 240 RVSVRARCEA ATMNDGCQWR KYGQKIAKGN PCPRAYYRCT VAPGCPVRKQ VQRCIDDMSI 300 LITTYEGTHN HPLPVGATAM ASTASAAASF MLLDSSNPIS DGTSSFTQAP FPYNTFNPLN 360 PASNFRSISP SDPSKGIVLD LTSNLTEPPI RFSTGSSSNI NTTTDPRFSW MQNKYQGGGG 420 ASAMNNNNFH KPRALDIHDR IWKGEENNNN NKPIDHDNVS AIASDPKFRV AVAAAITSLM 480 NKESHTTHPI GTSFGPRSSQ NGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 240 | 316 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN39172.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096848 | 0.0 | BT096848.1 Soybean clone JCVI-FLGm-15D10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028246643.1 | 0.0 | probable WRKY transcription factor 9 | ||||
Swissprot | Q9C9F0 | 1e-80 | WRKY9_ARATH; Probable WRKY transcription factor 9 | ||||
TrEMBL | A0A0B2S4P3 | 0.0 | A0A0B2S4P3_GLYSO; Putative WRKY transcription factor 9 | ||||
STRING | XP_007159029.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9320 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 2e-72 | WRKY DNA-binding protein 9 |
Publications ? help Back to Top | |||
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