PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN39075.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 700aa MW: 77266.4 Da PI: 7.5109 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.5 | 5.4e-23 | 118 | 219 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ ++ + + +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + +++ l KHN39075.1 118 FAKTLTQSDANNGGGFSVPRYCAETIfprldysVDPPVQ--NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAENGDL 212 89****************************996445555..69999********************************************..4488999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ KHN39075.1 213 CVGIRRA 219 ****997 PP | |||||||
2 | Auxin_resp | 109.4 | 3.8e-36 | 287 | 370 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a++k++FevvY+Prast+eF+vk++ ve+al+++++ G Rfkmafetedss++++ +Gt+++ + +dp++WpnS+Wr+L+ KHN39075.1 287 ASNLAANKKPFEVVYYPRASTPEFCVKASLVEAALQIRWCSGIRFKMAFETEDSSRISWfMGTISSAQVADPLNWPNSPWRLLQ 370 67899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-36 | 111 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.76E-29 | 112 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.44E-21 | 117 | 218 | No hit | No description |
PROSITE profile | PS50863 | 12.872 | 118 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.9E-21 | 118 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-21 | 118 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.0E-31 | 287 | 370 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.57 | 614 | 694 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MITFMDTKEK SKEVESCLDP QLWHACAGGI VQMPAVNSKV YYFPQGHAEH ACGPVNFRTC 60 PKVPPFVPCR VTAVKYRADP ETDEVYAKLK LIPLNANDVD YDRDVVGGAE TQDKPASFAK 120 TLTQSDANNG GGFSVPRYCA ETIFPRLDYS VDPPVQNILA KDVHGETWKF RHIYRGTPRR 180 HLLTTGWSTF VNHKKLVAGD SIVFLRAENG DLCVGIRRAK KGICGGLETS SGWNPAGGNC 240 HIPYGGFSPF FREDDNRISR NGNSNGLNPS VSMMGKGKVR PEAVSEASNL AANKKPFEVV 300 YYPRASTPEF CVKASLVEAA LQIRWCSGIR FKMAFETEDS SRISWFMGTI SSAQVADPLN 360 WPNSPWRLLQ VTWDEPDLLQ NVRRVSPWLV ELVSNMPAIH FSPFSPPRKK LRLPQQPDFP 420 LDGQIPLSTF PSNLLGPSNT NQFGCLLEST PAGMQGARHA HYGLSLSDLH LSKLQSGLFS 480 TGFPSLDHAA TPMRVSNSIT LQKPNLSENV SCLLTMANST QSSKKLDVGK TPSLVLFGQK 540 ILTEQQISPS SSGDTLSPVL TRNCSSDGNV DKVTNFSDGS GSALHQEGLR EHSSCERFQW 600 CKDNHQETEA GLEIGHCKVF MESEDVGRTM DLSLLRSYDE LHRKLADMFG IEKSEMLSHV 660 LYRDSTGAVK RISDESFSDF TRTAKRLTIL MDSGSNNVGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-77 | 8 | 391 | 41 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN39075.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537296.1 | 0.0 | auxin response factor 18 isoform X1 | ||||
Refseq | XP_006588784.1 | 0.0 | auxin response factor 18 isoform X1 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | K7LHL4 | 0.0 | K7LHL4_SOYBN; Auxin response factor | ||||
STRING | GLYMA10G06080.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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