PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38883.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 487aa    MW: 53496.7 Da    PI: 7.9208
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38883.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.63.5e-14191250155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+ ++ a++k++g
  KHN38883.1 191 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARSYDLAALKYWG 250
                 57*******************666664478446*************************98 PP
2AP250.64.7e-16293344155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  KHN38883.1 293 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 344
                 57****************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.40E-21191260No hitNo description
PfamPF008474.3E-11191250IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-17191260IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-15192259IPR001471AP2/ERF domain
PROSITE profilePS5103219.137192258IPR001471AP2/ERF domain
SMARTSM003802.3E-29192264IPR001471AP2/ERF domain
PRINTSPR003671.5E-6193204IPR001471AP2/ERF domain
CDDcd000181.93E-11293352No hitNo description
SuperFamilySSF541716.02E-18293353IPR016177DNA-binding domain
PfamPF008472.5E-10293344IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-18294352IPR001471AP2/ERF domain
PROSITE profilePS5103219.164294352IPR001471AP2/ERF domain
SMARTSM003806.0E-31294358IPR001471AP2/ERF domain
PRINTSPR003671.5E-6334354IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MARASTNWLS FSLSPMDMLR TPEPQFVQYD AASDTSSHHY YLDNLYTNGW GNGSLKFEQN  60
LNHSDVSFVQ SSSSLMTHIY DHHHHHHHHG SSAYFGGDHQ DLKAITGFQA FSTNSGSEVD  120
DSASIGKAQG SEFGTHSIES SVNEFAAFSG GTNTGGTLSL AVAQSSEKAV AAAAESDRSK  180
KVVDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQVYLGG YDKEEKAARS  240
YDLAALKYWG PTATTNFPVS NYSKEVEEMK HVTKQEFIAS LRRKSSGFSR GASIYRGVTR  300
HHQQGRWQAR IGRVAGNKDL YLGTFATEEE AAEAYDIAAI KFRGANAVTN FEMNRYDVEA  360
IMKSSLPVGG AAKRLRLSLE SEQKALPVSS SSSSSQQQNP HQQQNPQCGN VSASINFSSI  420
HQPIASIPCG IPFDSTTAYY HHNLFQHFHP TNAGTAASAV TSANANALTA LPPTAAAEFF  480
IWPHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38883.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028248215.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-163AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A445J3I40.0A0A445J3I4_GLYSO; AP2-like ethylene-responsive transcription factor AIL6
STRINGGLYMA01G02760.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-139AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  3. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  4. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]