PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38819.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 732aa    MW: 81292.9 Da    PI: 5.9836
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38819.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.72.9e-983767313374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 ++L++ Ae +++g+   aq +Larl+++ sp g+p+qR+a+y++eAL + l++   +  + ++ s+    + + ++ a+k fse+sP+l+f+++t+Nqa
  KHN38819.1 376 DQLYKTAELIEAGNPVHAQGILARLNHQLSPIGRPFQRAAFYMKEALMSLLHS---NAHSFMAFSPI---SFIFKIGAYKSFSEISPVLQFANFTCNQA 468
                 689*************************************************9...44444445555...59*************************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rvkpg 199
                 + eave+++r+H+iDfdi+ G+QW +++q++a R++g+psl++T+++sp++ ++ el+ t+e+L ++A+ ++v+fefnvl  ++l++ +   L ++  +
  KHN38819.1 469 LIEAVERSDRIHVIDFDIGFGVQWSSFMQEIALRSSGAPSLKVTAIVSPSTCDEVELNFTRENLIQYAKDINVSFEFNVLSIESLNSPSCPLLgKFFDN 567
                 ********************************************************************************999999999999967788* PP

        GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 Ea++Vn+ ++ ++ +      +s  ++vL++vk+l+Pkvvv  ++ +d  + ++ + +++ l++ysal++sl+a    + +  +k+Er++++++i++++
  KHN38819.1 568 EAIVVNMPVSSFTNY------PSLFPSVLHFVKQLRPKVVVTLDRICDQMDVPLPTNVVHVLQCYSALLESLDAV-NVNLDVLQKIERHFIQPAIKKII 659
                 *********888877......555568*********************************************665.3466999**************** PP

        GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +      +e+l  Wr+ ++++GF+p ++s+++++qa++l+++ +++g++ve +  slvl+W++++L+svS Wr
  KHN38819.1 660 LGHHHF----QEKLPPWRNLFMQSGFSPFTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLCWQKKELISVSTWR 731
                 998887....89***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.435348711IPR005202Transcription factor GRAS
PfamPF035141.0E-95376731IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MKVMPLPFEE FQGKGVLDFS SASDSFSVLL HNPQPKWTID KEDYCYVGSI TEPTSVLGSR  60
RSLSPPTSSS TMSSSLGSSN NSTSKGGGGT SANTTNNPTP PSDYNNNNPP QESSPEKCGI  120
RMEDWECQDQ SILRLIMGDV EDPSAGLSKL LQSTACGSQS ADFNAGFGVV DQQGLNMNMN  180
MNMVGGNIDP NYPAGFPFIA ENMDGQNAKA GSGTGQVSES VVFSANNPLM VSSSVSPGVF  240
TSQQQQQEFG VVDEKPQVIN PQFMLNQNQV QFSDNPSFFL PLMYPQVQEQ QVFSQHQAKH  300
HLFDTIGHNF QAPRLSLLDS GQEVFGRRQQ TQLPLFPHHM QQQQQQQSMV MPSTKQQKVS  360
STGDDASHQL QQAIFDQLYK TAELIEAGNP VHAQGILARL NHQLSPIGRP FQRAAFYMKE  420
ALMSLLHSNA HSFMAFSPIS FIFKIGAYKS FSEISPVLQF ANFTCNQALI EAVERSDRIH  480
VIDFDIGFGV QWSSFMQEIA LRSSGAPSLK VTAIVSPSTC DEVELNFTRE NLIQYAKDIN  540
VSFEFNVLSI ESLNSPSCPL LGKFFDNEAI VVNMPVSSFT NYPSLFPSVL HFVKQLRPKV  600
VVTLDRICDQ MDVPLPTNVV HVLQCYSALL ESLDAVNVNL DVLQKIERHF IQPAIKKIIL  660
GHHHFQEKLP PWRNLFMQSG FSPFTFSNFT EAQAECLVQR APVRGFHVER KPSSLVLCWQ  720
KKELISVSTW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2838273027378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38819.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576434.10.0scarecrow-like protein 6
RefseqXP_028224252.10.0scarecrow-like protein 6
TrEMBLA0A0B2S3A60.0A0A0B2S3A6_GLYSO; Scarecrow-like protein 6
TrEMBLI1JKU20.0I1JKU2_SOYBN; Uncharacterized protein
STRINGGLYMA03G03760.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-125GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]