PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN38779.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YC | ||||||||
Protein Properties | Length: 247aa MW: 28052.2 Da PI: 10.667 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 30 | 1.1e-09 | 147 | 229 | 17 | 99 |
NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 k + +P+ ri+ ++k ++ ++s ea + +a e f+ +++ ++ + +++ l +a +v++ +dfl d vp+ KHN38779.1 147 KMNVFPMNRIRTMIKGEDPDMRVSQEALLAINNAVEKFLEQFSQEAYAFCVRDRKKCLSYDHLAHVVSKQRRYDFLSDFVPER 229 67789**********87666789*********************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.09E-15 | 151 | 227 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.4E-22 | 151 | 228 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.0E-14 | 151 | 213 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0071897 | Biological Process | DNA biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003887 | Molecular Function | DNA-directed DNA polymerase activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MTSSNSPKPE KKITKNTEIS KTQKKKTKNA ETPKTEKKKT KNAETPKTEK KKTKNAETPK 60 TEKKKTKNAE TPKTEKKKNA EIPKIEKKKT KSAEIPLTDG KTKRDREIAK EENKKKTKKP 120 KLSNGTSKQR DEGSKKGVAE GKGEEGKMNV FPMNRIRTMI KGEDPDMRVS QEALLAINNA 180 VEKFLEQFSQ EAYAFCVRDR KKCLSYDHLA HVVSKQRRYD FLSDFVPERV KAEDALRERS 240 AAGTGGH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN38779.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093902 | 0.0 | BT093902.1 Soybean clone JCVI-FLGm-14G24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001242442.2 | 1e-138 | uncharacterized protein LOC100793738 | ||||
Refseq | XP_028187896.1 | 1e-138 | DNA polymerase epsilon subunit C-like isoform X1 | ||||
TrEMBL | A0A445I4P4 | 1e-137 | A0A445I4P4_GLYSO; Uncharacterized protein | ||||
TrEMBL | I1LL70 | 1e-137 | I1LL70_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G20740.1 | 1e-137 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 3e-26 | nuclear factor Y, subunit C10 |
Publications ? help Back to Top | |||
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