PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38758.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 305aa    MW: 34497.4 Da    PI: 9.4452
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38758.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.7e-18234267134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  KHN38758.1 234 CLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 267
                 99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.675228264IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-16228278IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15230290No hitNo description
Gene3DG3DSA:3.30.50.101.6E-14232265IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.14E-16233280No hitNo description
PROSITE patternPS003440234259IPR000679Zinc finger, GATA-type
PfamPF003202.3E-16234267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKDCWFFDNN FNGLSDESLD DVMDMELLDL PLDFEDVETD AVEEQDWDAQ LKLLEDPPPP  60
LGVFPLQQSS AFCGQTRNEN AKLDSKSFSA SLAKTVRPAY GKTIPVQKVS LKGKDLLQFQ  120
TNSPVSVFES SSSSPSVENS NFELPVIPTK RPRTKRRRLS NISLLYSIPF ILTSPAFQKF  180
QRMDFSKSDI QTQPSGELLC KFKKKQRKKD IPLPANKIEM KRSSSQESVA PRKCLHCEVT  240
KTPQWREGPM GPKTLCNACG VRYRSGRLFA EYRPASSPTF VASLHSNSHK KVLEIRNRAT  300
QVTVR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154158KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38758.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984950.0BT098495.1 Soybean clone JCVI-FLGm-12F13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028191365.10.0GATA transcription factor 11-like
TrEMBLA0A445I3450.0A0A445I345_GLYSO; GATA transcription factor 11 isoform A
STRINGGLYMA11G20480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-38GATA family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]