PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN38630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YB | ||||||||
Protein Properties | Length: 161aa MW: 17915.9 Da PI: 4.7746 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 38.6 | 2.6e-12 | 5 | 99 | 6 | 95 |
NF-YB 6 rflPianvsrimkkvlP...ana..kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 ++lP + v r++k l +++ +skda + e fi ++++ a+d c++ kr+ in +d++ al + f +++ plk+ l+++r+ ++ KHN38630.1 5 EELPRSIVRRVVKDKLSrcsEDGeiSVSKDALLALSESGRIFIHYLSATANDICKESKRQIINVEDVFKALEETEFPEFLRPLKASLEEFRKKNA 99 57888999999999886222334115789**************************************************************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.4E-31 | 3 | 132 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.3E-9 | 6 | 75 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.28E-24 | 7 | 117 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0071897 | Biological Process | DNA biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003887 | Molecular Function | DNA-directed DNA polymerase activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MSEAEELPRS IVRRVVKDKL SRCSEDGEIS VSKDALLALS ESGRIFIHYL SATANDICKE 60 SKRQIINVED VFKALEETEF PEFLRPLKAS LEEFRKKNAG KKAAVSKGKD DEPRKKRKLE 120 GESPDKGEGS DKAELSDKGE DPDKGESDKG ESGDETNDLK E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5y26_A | 1e-13 | 7 | 122 | 18 | 128 | DNA polymerase epsilon subunit D |
5y27_A | 1e-13 | 7 | 122 | 18 | 128 | DNA polymerase epsilon subunit D |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 116 | RKKNAGKKAAVSKGKDDEPRKKR |
2 | 112 | 118 | PRKKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN38630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090451 | 0.0 | BT090451.1 Soybean clone JCVI-FLGm-4D13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028187849.1 | 1e-109 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A445I2E7 | 1e-108 | A0A445I2E7_GLYSO; DNA polymerase epsilon subunit 3 | ||||
STRING | GLYMA11G18960.1 | 1e-108 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11863 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 7e-40 | nuclear factor Y, subunit B11 |
Publications ? help Back to Top | |||
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