PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN38445.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 467aa MW: 51118.8 Da PI: 8.6006

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN38445.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.5	3.3e-11	56	130	2	89
FAR1 2 fYneYAkevGFsvrksksk.kskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY eY+k+vGFs + s+ +g + r+fvC +e ++++ ++ C+a+++++++ ++kw+vtk+ ++H+H+l KHN38445.1 56 FYIEYGKRVGFSCKAGLYGgCSTADGANMYREFVCGREDSKRKPPES--------------CNAMIRIEQKGQNKWVVTKFIKDHSHSL 130 9**********9987651568999******99988887777..............************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-8	56	130	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MGEGSDHQAM ADNGNAESSE GGVSSAENNS GSHVRVGVSE PYVGREFDSE DAAKAFYIEY 60 GKRVGFSCKA GLYGGCSTAD GANMYREFVC GREDSKRKPP ESCNAMIRIE QKGQNKWVVT 120 KFIKDHSHSL GNLSKVHNIR PRKPFSSVGR TMPETYQGVG LVPSGVMYVS MDKNCIPTKN 180 IQGIKNIPAA AAVAETNQPV KSPTMMNYAS LTSRYSNLCW EAIKYAEEGA LTVEIYDTAI 240 SALRESGKKI SFMRRSVAKV APPSHPASGT AYDDRKSPTS TVDTNPLLWP LQDETTQRFN 300 LNDASTPVQS VADLNLPQMT PVSLQRDDGP PENMVVYPCL KSLTWVMENR NSTPGNRVAV 360 ISLKLQDYSR IPSTESEVKF NLSKVSLEPL FNHMVNISDQ LSTPTRKFAV LNLKLPVAET 420 TSGASEVKFQ VSKDTLGAVL RSMAYIREQL LGPGDAQTEP LSKRPRK

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MGEGSDHQAM ADNGNAESSE GGVSSAENNS GSHVRVGVSE PYVGREFDSE DAAKAFYIEY  60
GKRVGFSCKA GLYGGCSTAD GANMYREFVC GREDSKRKPP ESCNAMIRIE QKGQNKWVVT  120
KFIKDHSHSL GNLSKVHNIR PRKPFSSVGR TMPETYQGVG LVPSGVMYVS MDKNCIPTKN  180
IQGIKNIPAA AAVAETNQPV KSPTMMNYAS LTSRYSNLCW EAIKYAEEGA LTVEIYDTAI  240
SALRESGKKI SFMRRSVAKV APPSHPASGT AYDDRKSPTS TVDTNPLLWP LQDETTQRFN  300
LNDASTPVQS VADLNLPQMT PVSLQRDDGP PENMVVYPCL KSLTWVMENR NSTPGNRVAV  360
ISLKLQDYSR IPSTESEVKF NLSKVSLEPL FNHMVNISDQ LSTPTRKFAV LNLKLPVAET  420
TSGASEVKFQ VSKDTLGAVL RSMAYIREQL LGPGDAQTEP LSKRPRK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN38445.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235227	0.0	AC235227.1 Glycine max strain Williams 82 clone GM_WBb0025G03, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003518461.1	1e-180	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_006575596.1	1e-180	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_028218917.1	1e-180	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_028218925.1	1e-180	protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	5e-95	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A445LUV3	1e-178	A0A445LUV3_GLYSO; Protein FAR1-RELATED SEQUENCE 3 isoform A
TrEMBL	B9S6M5	0.0	B9S6M5_RICCO; Uncharacterized protein
TrEMBL	I1JIP9	1e-178	I1JIP9_SOYBN; Uncharacterized protein
STRING	GLYMA02G44110.1	1e-179	(Glycine max)
STRING	XP_002521644.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	2e-97	FAR1-related sequence 3

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]