PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38382.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 266aa    MW: 27825.5 Da    PI: 8.9441
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38382.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70281.22.7e-25154207101154
      DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                  ++slP +v+++avf+cvrv++v+dg++e+aYq++v+igGh fkG+LydqG+e+
  KHN38382.1 154 FKESLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHEFKGFLYDQGAEN 207
                 3456***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.0E-22142206IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016249.6E-28158204IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGLEGRTILG KKEKIWMTPY IIDHIVATTR RLPSDSGAFA DWAATASSGA GGGGGRAVPV  60
DELSLGFNAE HLGSRRTPER APAHDVGHRG AALVAPLPAL KNLGSLLHKP QQPLTHPLLT  120
PPLLEALTLA LAIKRRTLLK EITHGQSRII HAGFKESLPG QVRAPAVFKC VRVTAVEDGQ  180
DEYAYQAVVK IGGHEFKGFL YDQGAENRDV YPNLSELHLG GGNGGSGGAG RNGVSSSSPM  240
MDPNDVYAAS GGGLLGGSSA YGNPMN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38382.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150362e-90AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-30Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]