PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN38379.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HB-other

Protein Properties

Length: 480aa MW: 53896.8 Da PI: 7.0785

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN38379.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.5	2.3e-08	5	29	33	57
HHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 33 LAkklgLterqVkvWFqNrRakekk 57 LA++lgLte+q++ WF+ rR k+k+ KHN38379.1 5 LAEELGLTEKQISGWFCHRRLKDKR 29 9**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.046	1	30	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.33E-7	2	37	IPR009057	Homeodomain-like
Pfam	PF00046	6.4E-6	5	29	IPR001356	Homeobox domain
CDD	cd00086	5.55E-6	5	29	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.4E-8	5	29	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MKLVLAEELG LTEKQISGWF CHRRLKDKRL MKDEAVANGR QDRSSGVIQD RGSGLGQDSC 60 GSSKHADHRY LDPKEVESHG LYNHELSVAD MTHRRRNHYP ENVSGVDDTS SESSSFLQER 120 FSQGQDPYDM EPSRHLTPNG ALPPLNPKGA VKMGHKPSGY LKVKGEIEHA AITAVRKQLG 180 RHYLEDGPLL GIEFDPLPPG AFECQTADTA NEPYSVANPL LSNSPEIFAA KRQPSLSSRY 240 DSYYTKFRSQ DSHMEGADFG SLHESDFQDK QDKKACQNIK QRQSLYGYTN NFPGRNTFPD 300 LYEDSTGEAS AYNSNKSHRM STKHGVEGMR SDSASNHSDH YEEKLTVKQK TLMLHGYDNI 360 NPKNIQRSEH VKSKPSSSIH NSRVPMDTEE RGLSARMAKE EMFKGNRKAK NTYCDVEGAG 420 MLSNEIMVAK RAKVDMLQQY NVKKSPVAEM ELKKIQRSVA EMPSSFSEDE TADTSSSLDY

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MKLVLAEELG LTEKQISGWF CHRRLKDKRL MKDEAVANGR QDRSSGVIQD RGSGLGQDSC  60
GSSKHADHRY LDPKEVESHG LYNHELSVAD MTHRRRNHYP ENVSGVDDTS SESSSFLQER  120
FSQGQDPYDM EPSRHLTPNG ALPPLNPKGA VKMGHKPSGY LKVKGEIEHA AITAVRKQLG  180
RHYLEDGPLL GIEFDPLPPG AFECQTADTA NEPYSVANPL LSNSPEIFAA KRQPSLSSRY  240
DSYYTKFRSQ DSHMEGADFG SLHESDFQDK QDKKACQNIK QRQSLYGYTN NFPGRNTFPD  300
LYEDSTGEAS AYNSNKSHRM STKHGVEGMR SDSASNHSDH YEEKLTVKQK TLMLHGYDNI  360
NPKNIQRSEH VKSKPSSSIH NSRVPMDTEE RGLSARMAKE EMFKGNRKAK NTYCDVEGAG  420
MLSNEIMVAK RAKVDMLQQY NVKKSPVAEM ELKKIQRSVA EMPSSFSEDE TADTSSSLDY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN38379.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003519513.1	0.0	uncharacterized protein LOC100805913 isoform X1
Refseq	XP_028219637.1	0.0	uncharacterized protein LOC114401325 isoform X2
TrEMBL	A0A445LVA4	0.0	A0A445LVA4_GLYSO; Homeobox-DDT domain protein RLT1 isoform A
TrEMBL	I1JIY2	0.0	I1JIY2_SOYBN; Uncharacterized protein
STRING	GLYMA02G44910.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	7e-66	HB-other family protein