PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38358.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 558aa    MW: 61823 Da    PI: 7.0502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38358.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.25.3e-17364410455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn+ ErrRRdriN+++ +L++l+P++      K +Ka++Le+A+eY+ksLq
  KHN38358.1 364 VHNQSERRRRDRINEKMRTLQQLIPNS-----NKTDKASMLEEAIEYLKSLQ 410
                 6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.87E-18354414No hitNo description
SuperFamilySSF474593.4E-20357421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.368360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-18364418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-14364410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-17366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MNNSIPGWDF ESDTCLTNQR KLIGPDQELV ELLWKNGQVV MHNQTHRKTL GNSSNLRQVQ  60
KSDQSVLRSS GPYGNSSNLD QEDAAPWVQF PLEDPLEQDF CSNLLSELPT CEFESYKPIR  120
QLEEEKFAKF FASGTPHHPT TSSSQPLPPN MKPSCIQGLQ GNPIPMPAPR FHGPDSSQKI  180
HDFGASRKVL NFPQFSTPRN NVPSAPGITQ FREKTTANMS QSEAREYSVI TVGSSHCGSN  240
HIPQEQDVSR ISSTGVWATT NNNTTLSAEP EAVRDYVQRP ICPKSGQGKS EMIELTVTSS  300
SGGSGSTGIG RTCSLSTRDH GQKRKGTEEE ALEEQSEDTE LKSADGNKAS QRTRSSRRNR  360
AAEVHNQSER RRRDRINEKM RTLQQLIPNS NKTDKASMLE EAIEYLKSLQ FQLQVMWMGG  420
GMTPVMFPGI QHYMSQMGMG MGAPSLPSIH NPMQLPKVPH DQAMSVLQIP NQNLMCQNPV  480
LGAFNYQNQM QNPCLPEQYA RYMGYHLMQN ASQPMNVFRY GSQAVQHSQT MIAPGNNSSG  540
PMSGTANIDD ADSGKAGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368373ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38358.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575634.10.0transcription factor PIF4
RefseqXP_014625858.10.0transcription factor PIF4
RefseqXP_028219844.10.0transcription factor PIF4-like
RefseqXP_028219851.10.0transcription factor PIF4-like
TrEMBLA0A445LV910.0A0A445LV91_GLYSO; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBLI1JJ020.0I1JJ02_SOYBN; Uncharacterized protein
STRINGGLYMA02G45150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.47e-42phytochrome interacting factor 3-like 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]