PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38325.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 263aa    MW: 29556.8 Da    PI: 8.4642
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38325.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.23.6e-33115172259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s++prsYYrCts++C vkk+vers +dp++v++tYeg+Hnh+
  KHN38325.1 115 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCGVKKRVERSFQDPTIVITTYEGQHNHH 172
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-3599174IPR003657WRKY domain
SuperFamilySSF1182904.45E-29107174IPR003657WRKY domain
PROSITE profilePS5081132.156109174IPR003657WRKY domain
SMARTSM007742.3E-38114173IPR003657WRKY domain
PfamPF031063.3E-26115172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDYNTLSRVF DMSCSSSEVI SSIDENPKKP SAGGDSVGVR GNQSTPNSSV SSSSNEAEAI  60
IEEDSTKSQK DKQPKACEAD GDEKPKKENK PKKKEKKPRE PRFAFLTKSE IDHLEDGYRW  120
RKYGQKAVKN SPYPRSYYRC TSQKCGVKKR VERSFQDPTI VITTYEGQHN HHCPATLRGS  180
AASMLSSPSF FGSSYMASSL PQDFLAQLVP SYSQINDHQS PMFHQNLSHN LHPQPQQQHQ  240
FQLSHDHGLL QDLLPSFPGK HEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-301071751078Probable WRKY transcription factor 4
2lex_A3e-301071751078Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18996KPKKKEKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38325.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150364e-91AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028220192.10.0WRKY transcription factor 71-like
TrEMBLA0A445LVF30.0A0A445LVF3_GLYSO; WRKY transcription factor 28
STRINGGLYMA02G45530.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-48WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]