PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38256.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 449aa    MW: 49508.6 Da    PI: 5.4795
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38256.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-30260318259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  Dg++WrKYGqK+ kg++ pr+YYrCt++ gCpv+k+v+r+aed +v+++tYeg+Hnh+
  KHN38256.1 260 ADGCQWRKYGQKMAKGNPWPRAYYRCTMStGCPVRKQVQRCAEDRSVLITTYEGQHNHP 318
                 7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-32244320IPR003657WRKY domain
PROSITE profilePS5081129.872254320IPR003657WRKY domain
SuperFamilySSF1182902.48E-27256320IPR003657WRKY domain
SMARTSM007745.0E-37259319IPR003657WRKY domain
PfamPF031061.7E-26261318IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEPTWNDAIV NVSNSSDPIM SFRGTPLVMD ELDFFAQKRK VSANDDDHQR VEDLHVDVCL  60
ILYILDLLTK NDTDVNNRST EEDAALETMD DKSNEFIALL TELDQMNAEN QRLRELVDQV  120
NNNCNTLRMQ LVKLTQKHHS HGNNGVIGEK EDMVPRSFLD IGVAEKDEPN SQQSSEGKLR  180
ESKSMVELGH GKDIAVLEAY KLDSTAGRES TKARMEGRQI STEQEFSNKV PRLDPASETM  240
SMIKKARVSV RAKSYSSMIA DGCQWRKYGQ KMAKGNPWPR AYYRCTMSTG CPVRKQVQRC  300
AEDRSVLITT YEGQHNHPLP PTTSVAASMP SILESASLPC SRNMATLSAS APFPTITLDL  360
TQNATNSSQL QRELPLGQLG LLSPLLAHKF MSVPKIFGQG MDTNSSFANI LNAATADPNF  420
TAALVAAITS VMGTSHSNTN ATNSTSGDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-25246321175WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38256.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028185357.10.0probable WRKY transcription factor 31
TrEMBLA0A445LVV20.0A0A445LVV2_GLYSO; WRKY transcription factor 6
STRINGGLYMA02G46280.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139131222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-86WRKY family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]