PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN38250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25436.8 Da PI: 5.5595 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.7 | 1e-11 | 49 | 83 | 21 | 55 |
AP2 21 dpseng....krkrfslgkfgtaeeAakaaiaarkkleg 55 g ++ r++lg+f+taeeAa+a++aa++ l+g KHN38250.1 49 R----GdqrpVKSRVWLGTFDTAEEAARAYDAAARTLRG 83 4....33346679************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.725 | 1 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-15 | 30 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-19 | 45 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-7 | 54 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-12 | 55 | 91 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MKGTSPNQKD EEGQWWRSLG DGDGGCERIH FKGASVPGRE EETVGEIRRG DQRPVKSRVW 60 LGTFDTAEEA ARAYDAAART LRGPKAKTNF PPLSPFCYPH PTTDPFFYTG FHDQHHHHNN 120 NNLNNPQRPT SSGMSSTVES FSGPRPPTTT TTTTTTTATP FLTATRRYPR TPPLVPEDCH 180 SDCDSSSSVV DDGDDNIVSS SFRPPLPFDL NALPFDDAAA DDDLRRTALC L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN38250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095979 | 1e-161 | BT095979.1 Soybean clone JCVI-FLGm-20M15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027331442.1 | 4e-69 | ethylene-responsive transcription factor 3 | ||||
Swissprot | Q9SXS8 | 4e-28 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | V7BBT0 | 5e-67 | V7BBT0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007142329.1 | 8e-68 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2263 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 9e-08 | ethylene response factor 7 |
Publications ? help Back to Top | |||
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