PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN38230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 188aa MW: 21454.6 Da PI: 8.3026 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.8 | 1.1e-28 | 110 | 168 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++++ r+YY+C+s gC+vkk+ver+++d ++v++tYeg Hnhe KHN38230.1 110 MDDGYKWRKYGKKSVKSNPNLRNYYKCSSGGCSVKKRVERDRDDSSYVITTYEGVHNHE 168 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.7E-32 | 97 | 170 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-26 | 102 | 170 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.389 | 105 | 170 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-31 | 110 | 169 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.9E-23 | 111 | 168 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MDFYFGNPHP YPNIHQYHAH NSVVSMTPSS PEIALSDYLM LDDYVDHQDS RSSQSTESSE 60 KATFCDPTHG FSTGATSKNN NMKCKNGINE NKRGVGPRIA FRTKSELEIM DDGYKWRKYG 120 KKSVKSNPNL RNYYKCSSGG CSVKKRVERD RDDSSYVITT YEGVHNHESP FTTYYSPISF 180 VHSDTTFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-24 | 100 | 170 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-24 | 100 | 170 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN38230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT091158 | 0.0 | BT091158.1 Soybean clone JCVI-FLGm-7E8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235313.2 | 1e-140 | uncharacterized protein LOC100500248 | ||||
Refseq | XP_028233204.1 | 1e-140 | probable WRKY transcription factor 50 | ||||
TrEMBL | A0A445KQ76 | 1e-138 | A0A445KQ76_GLYSO; Putative WRKY transcription factor 51 | ||||
TrEMBL | I1K4R6 | 1e-138 | I1K4R6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G31800.1 | 1e-139 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 1e-41 | WRKY DNA-binding protein 51 |
Publications ? help Back to Top | |||
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